changeset 10:1bc5a03faf2e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 1102ae206f5dfb9322d28b23d224eb67a7b80a1c

--- a/funannotate_predict.xml	Fri Oct 20 10:08:19 2023 +0000
+++ b/funannotate_predict.xml	Wed Nov 01 09:53:49 2023 +0000
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools" />
     <requirements>
         <expand macro="requirements" />
     </requirements>
@@ -45,6 +46,7 @@
 --SeqAccession '${organism.SeqAccession}'
 --name '${organism.name}'
 --numbering ${organism.numbering}
+--header_length ${header_length}
 
 #if $parameters:
     --parameters '${parameters}'
@@ -253,7 +255,7 @@
                 <validator type="regex" message="Key must consist of alphanumeric characters only, possibly separated by the period character ('.')">^[\w: ]+$</validator>
             </param>
         </section>
-
+        <param argument="--header_length" type="integer" value="16" min="1" label="Maximum length of FASTA headers" help="The NCBI max FASTA header length is 16. Increase if you don't submit to NCBI." />
         <param name="outputs" type="select" optional="true" multiple="true" label="Which outputs should be generated">
             <option value="gbk" selected="true">Annotated genome (genbank)</option>
             <option value="tbl">NCBI tbl annotation file (use for NCBI submission)</option>

--- a/macros.xml	Fri Oct 20 10:08:19 2023 +0000
+++ b/macros.xml	Wed Nov 01 09:53:49 2023 +0000
@@ -1,8 +1,14 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">1.8.15</token>
-    <token name="@VERSION_SUFFIX@">2</token>
-
+    <token name="@VERSION_SUFFIX@">3</token>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">
+                funannotate
+            </xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>
     </xml>