Mercurial > repos > iuc > funannotate_predict
changeset 2:33092577d65d draft
"planemo upload commit c70e2e82ba7d3f9ee43c101ab267cdf0847d8864"
| author | iuc |
|---|---|
| date | Thu, 21 Oct 2021 07:32:20 +0000 |
| parents | 1a59958c1f76 |
| children | 73909ee8162e |
| files | funannotate_predict.xml |
| diffstat | 1 files changed, 12 insertions(+), 6 deletions(-) [+] |
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--- a/funannotate_predict.xml Mon Oct 04 19:37:44 2021 +0000 +++ b/funannotate_predict.xml Thu Oct 21 07:32:20 2021 +0000 @@ -64,9 +64,9 @@ --transcript_evidence $est_list #end if -#if $evidences.prot_evidence == 'custom': +#if $evidences.prot_evidence.prot_evidence_source == 'custom': --protein_evidence - #for $protev in $evidences.protein_evidence: + #for $protev in $evidences.prot_evidence.protein_evidence: '${protev}' #end for #end if @@ -506,9 +506,12 @@ <has_text text="Aligning transcript evidence to genome with minimap2"/> <has_text text="Found 16 alignments, wrote GFF3 and Augustus hints to file"/> <has_text text="Extracting hints from RNA-seq BAM file using bam2hints"/> - <has_text text="Mapping 13 proteins to genome using diamond and exonerate"/> - <has_text text="Found 4 preliminary alignments --> aligning with exonerate"/> + <has_text text="Mapping 16 proteins to genome using diamond and exonerate"/> + <has_text text="Found 21 preliminary alignments --> aligning with exonerate"/> </assert_stderr> + <assert_command> + <has_text text="--protein_evidence"/> + </assert_command> </test> <!-- proteins --> @@ -577,9 +580,12 @@ <not_has_text text="Aligning transcript evidence to genome with minimap2"/> <not_has_text text="Found 16 alignments, wrote GFF3 and Augustus hints to file"/> <not_has_text text="Extracting hints from RNA-seq BAM file using bam2hints"/> - <has_text text="Mapping 13 proteins to genome using diamond and exonerate"/> - <has_text text="Found 4 preliminary alignments --> aligning with exonerate"/> + <has_text text="Mapping 16 proteins to genome using diamond and exonerate"/> + <has_text text="Found 21 preliminary alignments --> aligning with exonerate"/> </assert_stderr> + <assert_command> + <has_text text="--protein_evidence"/> + </assert_command> </test> </tests> <help><![CDATA[