Mercurial > repos > iuc > funannotate_predict

changeset 6:7abc5f6dd595 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/funannotate commit 8307455ce2bb36981fee509f556ff17c227a9d8a
author iuc
date Sun, 22 Jan 2023 17:30:57 +0000
parents 2bba2ff070d9
children 51b6ee65ef7f
files funannotate_predict.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/funannotate_predict.xml	Thu Nov 25 16:23:03 2021 +0000
+++ b/funannotate_predict.xml	Sun Jan 22 17:30:57 2023 +0000
@@ -22,8 +22,11 @@
     sed -i.bak 's|/tmp/prout|'`pwd`'/hacked_database|' './hacked_database/trained_species/fly/info.json' &&
 #end if
 
+mkdir -p input/ &&
+ln -s '${input}' input/input.fasta &&
+
 funannotate predict
---input '${input}'
+--input input/input.fasta
 --out output
 #if $uglyTestingHack == "true":
     --database `pwd`'/hacked_database'
--- a/macros.xml	Thu Nov 25 16:23:03 2021 +0000
+++ b/macros.xml	Sun Jan 22 17:30:57 2023 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">1.8.9</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
 
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">funannotate</requirement>