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annotate README.md @ 0:998b719a94cb draft

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author iuc
date Thu, 26 Aug 2021 06:56:18 +0000
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998b719a94cb "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
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1 # Funannotate
998b719a94cb "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
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998b719a94cb "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
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3 Funannotate can use GeneMark to predict gene, but due to licensing issues, we are not allowed to distribute GeneMark automatically.
998b719a94cb "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
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998b719a94cb "planemo upload commit 9613152729099079c7465c3d5d42005ef22ca91e"
iuc
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5 If you want to use it, the Galaxy administrator needs to install it GeneMark following the instructions on https://github.com/nextgenusfs/funannotate, and set the `GENEMARK_PATH` variable on the job destination.