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comparison test-data/gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains @ 0:340633249b3d draft

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author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
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-1:000000000000 0:340633249b3d
1 GenomeAnalysisEngine - Strictness is SILENT
2 TableRecalibrationWalker - Reading in the data from input csv file...
3 TableRecalibrationWalker - ...done!
4 TableRecalibrationWalker - The covariates being used here:
5 TableRecalibrationWalker - ReadGroupCovariate
6 TableRecalibrationWalker - QualityScoreCovariate
7 TableRecalibrationWalker - CycleCovariate
8 TableRecalibrationWalker - DinucCovariate
9 TableRecalibrationWalker - HomopolymerCovariate
10 TableRecalibrationWalker - MinimumNQSCovariate
11 TableRecalibrationWalker - PositionCovariate
12 TableRecalibrationWalker - Generating tables of empirical qualities for use in sequential calculation...
13 TableRecalibrationWalker - ...done!
14 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
15 TraversalEngine - Total runtime
16 TraversalEngine - 0 reads were filtered out during traversal out of 10 total (0.00%)