Mercurial > repos > iuc > gatk2
diff depth_of_coverage.xml @ 4:f244b8209eb8 draft
bug fix release
author | iuc |
---|---|
date | Mon, 25 Aug 2014 17:43:11 -0400 |
parents | 340633249b3d |
children | 35c00763cb5c |
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--- a/depth_of_coverage.xml Wed Feb 19 04:39:38 2014 -0500 +++ b/depth_of_coverage.xml Mon Aug 25 17:43:11 2014 -0400 @@ -1,4 +1,4 @@ -<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="0.0.7"> +<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="@VERSION@.0"> <description>on BAM files</description> <expand macro="requirements" /> <macros> @@ -692,7 +692,7 @@ DepthOfCoverage processes a set of bam files to determine coverage at different levels of partitioning and aggregation. Coverage can be analyzed per locus, per interval, per gene, or in total; can be partitioned by sample, by read group, by technology, by center, or by library; and can be summarized by mean, median, quartiles, and/or percentage of bases covered to or beyond a threshold. Additionally, reads and bases can be filtered by mapping or base quality score. -For more information on the GATK Depth of Coverage, see this `tool specific page <http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_annotator_DepthOfCoverage.html>`_. +For more information on the GATK Depth of Coverage, see this `tool specific page <http://www.broadinstitute.org/gatk/gatkdocs/org_broadinstitute_sting_gatk_walkers_coverage_DepthOfCoverage.html>`_. To learn about best practices for variant detection using GATK, see this `overview <http://www.broadinstitute.org/gatk/guide/topic?name=best-practices>`_. @@ -738,4 +738,5 @@ @CITATION_SECTION@ </help> + <expand macro="citations" /> </tool>