diff tool_dependencies.xml @ 6:35c00763cb5c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gatk2 commit cf399638ebca4250bcc15f468238a9964de97b33

--- a/tool_dependencies.xml	Mon Aug 25 17:44:53 2014 -0400
+++ b/tool_dependencies.xml	Mon Jun 04 05:38:15 2018 -0400
@@ -3,11 +3,11 @@
     <set_environment version="1.0">
         <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable>
     </set_environment>
-    <!-- 
+    <!--
     Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call.
     The intended use case was to prohibit GATK2 to collect and send data.
     For example:
-    
+
     -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home
     -->
     <set_environment version="1.0">
@@ -15,12 +15,12 @@
     </set_environment>
 
     <package name="samtools" version="0.1.19">
-        <repository changeset_revision="923adc89c666" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="c9bd782f5342" name="package_samtools_0_1_19" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="picard" version="1.56.0">
-        <repository changeset_revision="61e41d21cb6f" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="99a28567c3a3" name="package_picard_1_56_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="ggplot2" version="0.9.3">
-        <repository changeset_revision="87a27fc31fb5" name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="07de191649b4" name="package_r_ggplot2_0_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>