Mercurial > repos > iuc > gatk2
view tool_dependencies.xml @ 3:2553f84b8174 draft
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author | iuc |
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date | Wed, 19 Feb 2014 04:39:38 -0500 |
parents | f760c0de8e3a |
children | f244b8209eb8 |
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<?xml version="1.0"?> <tool_dependency> <set_environment version="1.0"> <environment_variable action="set_to" name="GATK2_PATH">/please set the path to your GATK2 dir in the corresponding env.sh file/</environment_variable> </set_environment> <!-- Use GATK2_SITE_OPTIONS to set additional parameters that should be inserted in every GATK2 call. The intended use case was to prohibit GATK2 to collect and send data. For example: -et "NO_ET" -K "/data/gatk2_key_file" ##ET no phone home --> <set_environment version="1.0"> <environment_variable action="set_to" name="GATK2_SITE_OPTIONS"> </environment_variable> </set_environment> <package name="samtools" version="0.1.19"> <repository changeset_revision="00e17a794a2e" name="package_samtools_0_1_19" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>