Mercurial > repos > iuc > gatk2

view test-data/gatk/gatk_unified_genotyper/gatk_unified_genotyper_out_1.log.contains @ 0:340633249b3d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author bgruening
date Mon, 02 Dec 2013 06:18:36 -0500
parents
children
line wrap: on
line source

Program Args: -T UnifiedGenotyper
GenomeAnalysisEngine - Strictness is SILENT
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
TraversalEngine -        Location processed.sites  runtime per.1M.sites completed total.runtime remaining
UnifiedGenotyper - Visited bases                                5387
UnifiedGenotyper - Callable bases                               5344
UnifiedGenotyper - Confidently called bases                     5344
UnifiedGenotyper - % callable bases of all loci                 99.202
UnifiedGenotyper - % confidently called bases of all loci       99.202
UnifiedGenotyper - % confidently called bases of callable loci  100.000
UnifiedGenotyper - Actual calls made                            1
TraversalEngine - Total runtime