comparison gecko.xml @ 1:8acaa11e3b6b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gecko commit d5a38da952de32b218895725c80b5bdac54c7dbf"
author iuc
date Fri, 18 Dec 2020 10:21:00 +0000
parents 09459f6ffe08
children 5efbd15675ca
comparison
equal deleted inserted replaced
0:09459f6ffe08 1:8acaa11e3b6b
1 <tool id="gecko" name="Gecko" version="@TOOL_VERSION@" profile="20.01"> 1 <tool id="gecko" name="Gecko" version="@TOOL_VERSION@" profile="20.01">
2 <description>Ungapped genome comparison</description> 2 <description>Ungapped genome comparison</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">1.1</token> 4 <token name="@TOOL_VERSION@">1.1.b</token>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">gecko</requirement> 7 <requirement type="package" version="@TOOL_VERSION@">gecko</requirement>
8 </requirements> 8 </requirements>
9 <command><![CDATA[ 9 <command><![CDATA[
82 <assert_contents> 82 <assert_contents>
83 <has_n_lines n="96"/> 83 <has_n_lines n="96"/>
84 </assert_contents> 84 </assert_contents>
85 </output> 85 </output>
86 </test> 86 </test>
87 <test expect_num_outputs="2">
88 <param name="query" value="mycoplasma-232.fasta"/>
89 <param name="db" value="mycoplasma-7422.fasta"/>
90 <param name="kmer" value="16"/>
91 <param name="minlen" value="50"/>
92 <param name="similarity" value="60"/>
93 <param name="selection_mode" value="alignments"/>
94 <output name="csv_output1" ftype="csv">
95 <assert_contents>
96 <has_n_lines n="640"/>
97 </assert_contents>
98 </output>
99 <output name="alignments2" ftype="txt">
100 <assert_contents>
101 <has_n_lines n="54138"/>
102 </assert_contents>
103 </output>
104 </test>
87 </tests> 105 </tests>
88 <help> 106 <help>
89 *GECKO* 107 *GECKO*
90 108
91 A pairwise genome comparison software for the detection of High-scoring Segment Pairs. 109 A pairwise genome comparison software for the detection of High-scoring Segment Pairs.