comparison gecko.xml @ 1:8acaa11e3b6b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gecko commit d5a38da952de32b218895725c80b5bdac54c7dbf"

0:09459f6ffe08

<tool id="gecko" name="Gecko" version="@TOOL_VERSION@" profile="20.01">
    <description>Ungapped genome comparison</description>
    <macros>
        <token name="@TOOL_VERSION@">1.1</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">gecko</requirement>
    </requirements>
    <command><![CDATA[

                <assert_contents>
                    <has_n_lines n="96"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
*GECKO*

A pairwise genome comparison software for the detection of High-scoring Segment Pairs.

1:8acaa11e3b6b

<tool id="gecko" name="Gecko" version="@TOOL_VERSION@" profile="20.01">
    <description>Ungapped genome comparison</description>
    <macros>
        <token name="@TOOL_VERSION@">1.1.b</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">gecko</requirement>
    </requirements>
    <command><![CDATA[

                <assert_contents>
                    <has_n_lines n="96"/>
                </assert_contents>
            </output>
        </test>
        <test expect_num_outputs="2">
            <param name="query" value="mycoplasma-232.fasta"/>
            <param name="db" value="mycoplasma-7422.fasta"/>
            <param name="kmer" value="16"/>
            <param name="minlen" value="50"/>
            <param name="similarity" value="60"/>
            <param name="selection_mode" value="alignments"/>
            <output name="csv_output1" ftype="csv">
                <assert_contents>
                    <has_n_lines n="640"/>
                </assert_contents>
            </output>
            <output name="alignments2" ftype="txt">
                <assert_contents>
                    <has_n_lines n="54138"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
*GECKO*

A pairwise genome comparison software for the detection of High-scoring Segment Pairs.