diff gecko.xml @ 1:8acaa11e3b6b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gecko commit d5a38da952de32b218895725c80b5bdac54c7dbf"

--- a/gecko.xml	Fri Nov 27 14:46:27 2020 +0000
+++ b/gecko.xml	Fri Dec 18 10:21:00 2020 +0000
@@ -1,7 +1,7 @@
 <tool id="gecko" name="Gecko" version="@TOOL_VERSION@" profile="20.01">
     <description>Ungapped genome comparison</description>
     <macros>
-        <token name="@TOOL_VERSION@">1.1</token>
+        <token name="@TOOL_VERSION@">1.1.b</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">gecko</requirement>
@@ -84,6 +84,24 @@
                 </assert_contents>
             </output>
         </test>
+        <test expect_num_outputs="2">
+            <param name="query" value="mycoplasma-232.fasta"/>
+            <param name="db" value="mycoplasma-7422.fasta"/>
+            <param name="kmer" value="16"/>
+            <param name="minlen" value="50"/>
+            <param name="similarity" value="60"/>
+            <param name="selection_mode" value="alignments"/>
+            <output name="csv_output1" ftype="csv">
+                <assert_contents>
+                    <has_n_lines n="640"/>
+                </assert_contents>
+            </output>
+            <output name="alignments2" ftype="txt">
+                <assert_contents>
+                    <has_n_lines n="54138"/>
+                </assert_contents>
+            </output>
+        </test>
     </tests>
     <help>
 *GECKO*