Mercurial > repos > iuc > gem_flux_distribution
diff test-data/textbook_model_cobrapy_exchange.csv @ 0:1c71660496fb draft default tip
planemo upload for repository https://github.com/AlmaasLab/elixir-galaxy-tools-systemsbiology commit 3f7bec1264a86e1488ee1315dbac0f44675f5171
| author | iuc |
|---|---|
| date | Fri, 13 Dec 2024 21:33:11 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/textbook_model_cobrapy_exchange.csv Fri Dec 13 21:33:11 2024 +0000 @@ -0,0 +1,21 @@ +reaction_id;reaction_name;reaction_stoichiometry;lower_bound;upper_bound +EX_ac_e;Acetate exchange;ac_e --> ;0.0;1000.0 +EX_acald_e;Acetaldehyde exchange;acald_e --> ;0.0;1000.0 +EX_akg_e;2-Oxoglutarate exchange;akg_e --> ;0.0;1000.0 +EX_co2_e;CO2 exchange;co2_e <=> ;-1000.0;1000.0 +EX_etoh_e;Ethanol exchange;etoh_e --> ;0.0;1000.0 +EX_for_e;Formate exchange;for_e --> ;0.0;1000.0 +EX_fru_e;D-Fructose exchange;fru_e --> ;0.0;1000.0 +EX_fum_e;Fumarate exchange;fum_e --> ;0.0;1000.0 +EX_glc__D_e;D-Glucose exchange;glc__D_e <=> ;-10.0;1000.0 +EX_gln__L_e;L-Glutamine exchange;gln__L_e --> ;0.0;1000.0 +EX_glu__L_e;L-Glutamate exchange;glu__L_e --> ;0.0;1000.0 +EX_h_e;H+ exchange;h_e <=> ;-1000.0;1000.0 +EX_h2o_e;H2O exchange;h2o_e <=> ;-1000.0;1000.0 +EX_lac__D_e;D-lactate exchange;lac__D_e --> ;0.0;1000.0 +EX_mal__L_e;L-Malate exchange;mal__L_e --> ;0.0;1000.0 +EX_nh4_e;Ammonia exchange;nh4_e <=> ;-1000.0;1000.0 +EX_o2_e;O2 exchange;o2_e <=> ;-1000.0;1000.0 +EX_pi_e;Phosphate exchange;pi_e <=> ;-1000.0;1000.0 +EX_pyr_e;Pyruvate exchange;pyr_e --> ;0.0;1000.0 +EX_succ_e;Succinate exchange;succ_e --> ;0.0;1000.0