comparison gemini_comp_hets.xml @ 2:93bb0cfacefb draft

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1:d3c4d0208bb2

            > "${ outfile }"
]]>
    </command>
    <expand macro="stdio" />
    <inputs>
        <param name="infile" type="data" format="sqlite" label="GEMINI database" />
        <expand macro="add_header_column" />
        <expand macro="column_filter" />
        <param name="only_affected" type="boolean" truevalue="--only-affected" falsevalue="" checked="False" 
            label="Report solely those compund heterozygotes impacted a sample labeled as affected" help="(--only-affected)"/>
        <param name="ignore_phasing" type="boolean" truevalue="--ignore-phasing" falsevalue="" checked="False" 
            label="Ignore phasing when screening for compound hets" help="Candidates are inherently putative. (--ignore-phasing)"/>
        <expand macro="filter" />
    </inputs>
    <outputs>
        <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>

2:93bb0cfacefb

            > "${ outfile }"
]]>
    </command>
    <expand macro="stdio" />
    <inputs>
        <expand macro="infile" />
        <expand macro="add_header_column" />
        <expand macro="column_filter" />
        <param name="only_affected" type="boolean" truevalue="--only-affected" falsevalue="" checked="False" 
            label="Report solely those compund heterozygotes impacted a sample labeled as affected" help="(--only-affected)"/>
        <param name="ignore_phasing" type="boolean" truevalue="--ignore-phasing" falsevalue="" checked="False" 
            label="Ignore phasing when screening for compound hets" help="Candidates are inherently putative. (--ignore-phasing)"/>
        <expand macro="filter" />
    </inputs>
    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>