Mercurial > repos > iuc > gemini
comparison gemini_stats.xml @ 2:93bb0cfacefb draft
Uploaded
| author | iuc |
|---|---|
| date | Mon, 12 Jan 2015 15:31:50 -0500 |
| parents | 720cbfb4190d |
| children |
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| 1:d3c4d0208bb2 | 2:93bb0cfacefb |
|---|---|
| 14 > "${ outfile }" | 14 > "${ outfile }" |
| 15 ]]> | 15 ]]> |
| 16 </command> | 16 </command> |
| 17 <expand macro="stdio" /> | 17 <expand macro="stdio" /> |
| 18 <inputs> | 18 <inputs> |
| 19 <param name="infile" type="data" format="sqlite" label="GEMINI database" /> | 19 <expand macro="infile" /> |
| 20 | 20 |
| 21 <param name="stats_type" type="select" label="Studying ..." help=""> | 21 <param name="stats_type" type="select" label="Studying ..." help=""> |
| 22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option> | 22 <option value="--tstv">Compute the transition and transversion ratios for the snps (--tstv)</option> |
| 23 <option value="--tstv-coding">Compute the transition/transversion ratios for the snps in the coding regions (--tstv-coding)</option> | 23 <option value="--tstv-coding">Compute the transition/transversion ratios for the snps in the coding regions (--tstv-coding)</option> |
| 24 <option value="--tstv-noncoding">Compute the transition/transversion ratios for the snps in the non-coding regions (--tstv-noncoding)</option> | 24 <option value="--tstv-noncoding">Compute the transition/transversion ratios for the snps in the non-coding regions (--tstv-noncoding)</option> |
| 28 <option value="--vars_by_sample">Return the total variants per sample, sum of homozygous and heterozygous variants (--vars-by-sample)</option> | 28 <option value="--vars_by_sample">Return the total variants per sample, sum of homozygous and heterozygous variants (--vars-by-sample)</option> |
| 29 </param> | 29 </param> |
| 30 | 30 |
| 31 </inputs> | 31 </inputs> |
| 32 <outputs> | 32 <outputs> |
| 33 <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" /> | 33 <data name="outfile" format="tabular" /> |
| 34 </outputs> | 34 </outputs> |
| 35 <tests> | 35 <tests> |
| 36 <test> | 36 <test> |
| 37 </test> | 37 </test> |
| 38 </tests> | 38 </tests> |