view gemini_db_info.xml @ 4:ba3abde6775b draft default tip

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author iuc
date Thu, 15 Jan 2015 15:33:48 -0500
parents 93bb0cfacefb
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<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>List the gemini database tables and columns</description>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">db_info</token>
    </macros>
    <command>
<![CDATA[
        gemini @BINARY@
            "${ infile }" | tr -s ' ' '\t'
            > "${ outfile }"
]]>
    </command>
    <expand macro="stdio" />
    <inputs>
        <expand macro="infile" />
    </inputs>
    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
**What it does**

Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote. 
If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table.

@CITATION@
    </help>
    <expand macro="citations"/>
</tool>