view gemini_db_info.xml @ 1:d3c4d0208bb2 draft

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<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>List the gemini database tables and columns</description>
    <expand macro="requirements" />
    <expand macro="version_command" />
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">db_info</token>
    </macros>
    <command>
<![CDATA[
        gemini @BINARY@
            "${ infile }" | tr -s ' ' '\t'
            > "${ outfile }"
]]>
    </command>
    <expand macro="stdio" />
    <inputs>
        <param name="infile" type="data" format="sqlite" label="GEMINI database" />
    </inputs>
    <outputs>
        <data name="outfile" format="tabular" label="${tool.name} on ${on_string}" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
**What it does**

Because of the sheer number of annotations that are stored in gemini, there are admittedly too many columns to remember by rote. 
If you can’t recall the name of particular column, just use the db_info tool. It will report all of the tables and all of the columns / types in each table.

@CITATION@
    </help>
    <expand macro="citations"/>
</tool>