Mercurial > repos > iuc > gemini_actionable_mutations
diff gemini_macros.xml @ 2:a0379503290f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 11ee7ac206d41894c0b6a11f2439aaea490824f0
author | iuc |
---|---|
date | Thu, 09 Nov 2017 13:19:15 -0500 |
parents | 9f0f5e984ae3 |
children | 3630a6e624d4 |
line wrap: on
line diff
--- a/gemini_macros.xml Tue Mar 22 21:41:45 2016 -0400 +++ b/gemini_macros.xml Thu Nov 09 13:19:15 2017 -0500 @@ -3,6 +3,8 @@ <requirements> <requirement type="package" version="0.18.1">gemini</requirement> <requirement type="package" version="0.2.6">tabix</requirement> + <!-- for conda useage --> + <!--requirement type="package" version="1.3.1">htslib</requirement--> <yield /> </requirements> </xml> @@ -63,6 +65,7 @@ <option value="impact_severity">impact_severity</option> <option value="max_aaf_all">alternative allele frequency</option> </param> + <param name="extra_cols" type="text" label="Additional columns." help="Separate by whitespace"/> </when> </conditional> </xml> @@ -96,6 +99,16 @@ #end if </token> + <token name="@COLUMN_SELECT@"> + #if $report.report_selector != 'all': + --columns "${report.columns} + #if str($report.extra_cols).strip() + #echo ','+','.join(str($report.extra_cols).split()) + #end if + " + #end if + </token> + <xml name="family"> <param name="families" type="text" value="" label="Comma seperated list of families to restrict the analysis to." help="e.g. Family1,Family3 (--families)"/> </xml>