comparison gemini_amend.xml @ 5:bff8fad3fb69 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59

4:a02cd62adb70

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
    <description>Amend an already loaded GEMINI database.</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">amend</token>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command>
<![CDATA[
        cp "${ infile }" "${ outfile }" &&

        gemini @BINARY@
        $clear
        --sample "${ ped }"

        "${ outfile }"
]]>
    </command>
    <inputs>

        <expand macro="infile" />

5:bff8fad3fb69

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@">
    <description>Amend an already loaded GEMINI database.</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">amend</token>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <expand macro="version_command" />
    <command>
<![CDATA[
        cp '$infile' '$outfile' &&

        gemini @BINARY@
        $clear
        --sample '$ped'

        '$outfile'
]]>
    </command>
    <inputs>

        <expand macro="infile" />