comparison gemini_comp_hets.xml @ 4:62647e2637f6 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

3:7cf9bc210044

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>Identifying potential compound heterozygotes</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">comp_hets</token>
    </macros>

        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
            <param name="report_selector" value="column_filter" />
            <param name="columns" value="chrom,start,end,ref,alt,gene,impact" />
            <param name="allow_unaffected" value="True" />
            <param name="max_priority" value="3" />
            <output name="outfile" file="gemini_comphets_result.tabular" />
        </test>
    </tests>
    <help>
**What it does**

4:62647e2637f6

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
    <description>Identifying potential compound heterozygotes</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">comp_hets</token>
    </macros>

        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
            <conditional name="report">
                <param name="report_selector" value="column_filter" />
                <param name="columns" value="chrom,start,end,ref,alt,gene,impact" />
            </conditional>
            <param name="allow_unaffected" value="True" />
            <param name="max_priority" value="3" />
            <output name="outfile">
                <assert_contents>
                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*gene.*" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
**What it does**