Mercurial > repos > iuc > gemini_comp_hets

diff gemini_comp_hets.xml @ 4:62647e2637f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 12:49:22 -0500
parents ed0b0677dcfe
children
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--- a/gemini_comp_hets.xml	Wed Oct 17 13:30:12 2018 -0400
+++ b/gemini_comp_hets.xml	Fri Dec 14 12:49:22 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Identifying potential compound heterozygotes</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -62,11 +62,17 @@
     <tests>
         <test>
             <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
-            <param name="report_selector" value="column_filter" />
-            <param name="columns" value="chrom,start,end,ref,alt,gene,impact" />
+            <conditional name="report">
+                <param name="report_selector" value="column_filter" />
+                <param name="columns" value="chrom,start,end,ref,alt,gene,impact" />
+            </conditional>
             <param name="allow_unaffected" value="True" />
             <param name="max_priority" value="3" />
-            <output name="outfile" file="gemini_comphets_result.tabular" />
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*gene.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>