Mercurial > repos > iuc > gemini_comp_hets
diff test-data/gemini_dbinfo_result.tabular @ 4:62647e2637f6 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
| author | iuc |
|---|---|
| date | Fri, 14 Dec 2018 12:49:22 -0500 |
| parents | 7cf9bc210044 |
| children |
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--- a/test-data/gemini_dbinfo_result.tabular Wed Oct 17 13:30:12 2018 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,209 +0,0 @@ -table_name column_name type -variants chrom text -variants start integer -variants end integer -variants vcf_id text -variants variant_id integer -variants anno_id integer -variants ref text -variants alt text -variants qual float -variants filter text -variants type text -variants sub_type text -variants gts blob -variants gt_types blob -variants gt_phases blob -variants gt_depths blob -variants gt_ref_depths blob -variants gt_alt_depths blob -variants gt_quals blob -variants gt_copy_numbers blob -variants gt_phred_ll_homref blob -variants gt_phred_ll_het blob -variants gt_phred_ll_homalt blob -variants call_rate float -variants in_dbsnp bool -variants rs_ids text -variants sv_cipos_start_left integer -variants sv_cipos_end_left integer -variants sv_cipos_start_right integer -variants sv_cipos_end_right integer -variants sv_length integer -variants sv_is_precise bool -variants sv_tool text -variants sv_evidence_type text -variants sv_event_id text -variants sv_mate_id text -variants sv_strand text -variants in_omim bool -variants clinvar_sig text -variants clinvar_disease_name text -variants clinvar_dbsource text -variants clinvar_dbsource_id text -variants clinvar_origin text -variants clinvar_dsdb text -variants clinvar_dsdbid text -variants clinvar_disease_acc text -variants clinvar_in_locus_spec_db bool -variants clinvar_on_diag_assay bool -variants clinvar_causal_allele text -variants pfam_domain text -variants cyto_band text -variants rmsk text -variants in_cpg_island bool -variants in_segdup bool -variants is_conserved bool -variants gerp_bp_score float -variants gerp_element_pval float -variants num_hom_ref integer -variants num_het integer -variants num_hom_alt integer -variants num_unknown integer -variants aaf real -variants hwe decimal(2,7) -variants inbreeding_coeff decimal(2,7) -variants pi decimal(2,7) -variants recomb_rate decimal(2,7) -variants gene text -variants transcript text -variants is_exonic bool -variants is_coding bool -variants is_splicing bool -variants is_lof bool -variants exon text -variants codon_change text -variants aa_change text -variants aa_length text -variants biotype text -variants impact text -variants impact_so text -variants impact_severity text -variants polyphen_pred text -variants polyphen_score float -variants sift_pred text -variants sift_score float -variants anc_allele text -variants rms_bq float -variants cigar text -variants depth integer -variants strand_bias float -variants rms_map_qual float -variants in_hom_run integer -variants num_mapq_zero integer -variants num_alleles integer -variants num_reads_w_dels float -variants haplotype_score float -variants qual_depth float -variants allele_count integer -variants allele_bal float -variants in_hm2 bool -variants in_hm3 bool -variants is_somatic bool -variants somatic_score float -variants in_esp bool -variants aaf_esp_ea decimal(2,7) -variants aaf_esp_aa decimal(2,7) -variants aaf_esp_all decimal(2,7) -variants exome_chip bool -variants in_1kg bool -variants aaf_1kg_amr decimal(2,7) -variants aaf_1kg_eas decimal(2,7) -variants aaf_1kg_sas decimal(2,7) -variants aaf_1kg_afr decimal(2,7) -variants aaf_1kg_eur decimal(2,7) -variants aaf_1kg_all decimal(2,7) -variants grc text -variants gms_illumina float -variants gms_solid float -variants gms_iontorrent float -variants in_cse bool -variants encode_tfbs text -variants encode_dnaseI_cell_count integer -variants encode_dnaseI_cell_list text -variants encode_consensus_gm12878 text -variants encode_consensus_h1hesc text -variants encode_consensus_helas3 text -variants encode_consensus_hepg2 text -variants encode_consensus_huvec text -variants encode_consensus_k562 text -variants vista_enhancers text -variants cosmic_ids text -variants info blob -variants cadd_raw float -variants cadd_scaled float -variants fitcons float -variants in_exac bool -variants aaf_exac_all decimal(2,7) -variants aaf_adj_exac_all decimal(2,7) -variants aaf_adj_exac_afr decimal(2,7) -variants aaf_adj_exac_amr decimal(2,7) -variants aaf_adj_exac_eas decimal(2,7) -variants aaf_adj_exac_fin decimal(2,7) -variants aaf_adj_exac_nfe decimal(2,7) -variants aaf_adj_exac_oth decimal(2,7) -variants aaf_adj_exac_sas decimal(2,7) -variants exac_num_het int -variants exac_num_hom_alt int -variants exac_num_chroms int -variants max_aaf_all REAL -variant_impacts variant_id integer -variant_impacts anno_id integer -variant_impacts gene text -variant_impacts transcript text -variant_impacts is_exonic bool -variant_impacts is_coding bool -variant_impacts is_splicing bool -variant_impacts is_lof bool -variant_impacts exon text -variant_impacts codon_change text -variant_impacts aa_change text -variant_impacts aa_length text -variant_impacts biotype text -variant_impacts impact text -variant_impacts impact_so text -variant_impacts impact_severity text -variant_impacts polyphen_pred text -variant_impacts polyphen_score float -variant_impacts sift_pred text -variant_impacts sift_score float -samples sample_id integer -samples family_id text -samples name text -samples paternal_id text -samples maternal_id text -samples sex text -samples phenotype text -samples ethnicity text -gene_detailed uid integer -gene_detailed chrom text -gene_detailed gene text -gene_detailed is_hgnc bool -gene_detailed ensembl_gene_id text -gene_detailed transcript text -gene_detailed biotype text -gene_detailed transcript_status text -gene_detailed ccds_id text -gene_detailed hgnc_id text -gene_detailed entrez_id text -gene_detailed cds_length text -gene_detailed protein_length text -gene_detailed transcript_start text -gene_detailed transcript_end text -gene_detailed strand text -gene_detailed synonym text -gene_detailed rvis_pct float -gene_detailed mam_phenotype_id text -gene_summary uid integer -gene_summary chrom text -gene_summary gene text -gene_summary is_hgnc bool -gene_summary ensembl_gene_id text -gene_summary hgnc_id text -gene_summary transcript_min_start text -gene_summary transcript_max_end text -gene_summary strand text -gene_summary synonym text -gene_summary rvis_pct float -gene_summary mam_phenotype_id text -gene_summary in_cosmic_census bool