comparison gemini_dump.xml @ 4:96a2d270bf0f draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

3:40f85b45e472

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>Extract data from the Gemini DB</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">dump</token>
    </macros>

    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_comphets_input.db" ftype="gemini.sqlite" />
            <param name="header" value="True" />
            <param name="report" value="--genotypes" />
            <output name="outfile" file="gemini_dump_result.tabular" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**

4:96a2d270bf0f

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
    <description>Extract data from the Gemini DB</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">dump</token>
    </macros>

    <outputs>
        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
            <param name="header" value="True" />
            <param name="report" value="--genotypes" />
            <output name="outfile">
                <assert_contents>
                    <has_line_matching expression="chrom&#009;start&#009;end&#009;.*sample&#009;.*genotype.*" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**What it does**