Mercurial > repos > iuc > gemini_dump
diff test-data/gemini_dbinfo_result.tabular @ 0:187b57debbba draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
| author | iuc |
|---|---|
| date | Thu, 18 Feb 2016 08:56:38 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/gemini_dbinfo_result.tabular Thu Feb 18 08:56:38 2016 -0500 @@ -0,0 +1,209 @@ +table_name column_name type +variants chrom text +variants start integer +variants end integer +variants vcf_id text +variants variant_id integer +variants anno_id integer +variants ref text +variants alt text +variants qual float +variants filter text +variants type text +variants sub_type text +variants gts blob +variants gt_types blob +variants gt_phases blob +variants gt_depths blob +variants gt_ref_depths blob +variants gt_alt_depths blob +variants gt_quals blob +variants gt_copy_numbers blob +variants gt_phred_ll_homref blob +variants gt_phred_ll_het blob +variants gt_phred_ll_homalt blob +variants call_rate float +variants in_dbsnp bool +variants rs_ids text +variants sv_cipos_start_left integer +variants sv_cipos_end_left integer +variants sv_cipos_start_right integer +variants sv_cipos_end_right integer +variants sv_length integer +variants sv_is_precise bool +variants sv_tool text +variants sv_evidence_type text +variants sv_event_id text +variants sv_mate_id text +variants sv_strand text +variants in_omim bool +variants clinvar_sig text +variants clinvar_disease_name text +variants clinvar_dbsource text +variants clinvar_dbsource_id text +variants clinvar_origin text +variants clinvar_dsdb text +variants clinvar_dsdbid text +variants clinvar_disease_acc text +variants clinvar_in_locus_spec_db bool +variants clinvar_on_diag_assay bool +variants clinvar_causal_allele text +variants pfam_domain text +variants cyto_band text +variants rmsk text +variants in_cpg_island bool +variants in_segdup bool +variants is_conserved bool +variants gerp_bp_score float +variants gerp_element_pval float +variants num_hom_ref integer +variants num_het integer +variants num_hom_alt integer +variants num_unknown integer +variants aaf real +variants hwe decimal(2,7) +variants inbreeding_coeff decimal(2,7) +variants pi decimal(2,7) +variants recomb_rate decimal(2,7) +variants gene text +variants transcript text +variants is_exonic bool +variants is_coding bool +variants is_splicing bool +variants is_lof bool +variants exon text +variants codon_change text +variants aa_change text +variants aa_length text +variants biotype text +variants impact text +variants impact_so text +variants impact_severity text +variants polyphen_pred text +variants polyphen_score float +variants sift_pred text +variants sift_score float +variants anc_allele text +variants rms_bq float +variants cigar text +variants depth integer +variants strand_bias float +variants rms_map_qual float +variants in_hom_run integer +variants num_mapq_zero integer +variants num_alleles integer +variants num_reads_w_dels float +variants haplotype_score float +variants qual_depth float +variants allele_count integer +variants allele_bal float +variants in_hm2 bool +variants in_hm3 bool +variants is_somatic bool +variants somatic_score float +variants in_esp bool +variants aaf_esp_ea decimal(2,7) +variants aaf_esp_aa decimal(2,7) +variants aaf_esp_all decimal(2,7) +variants exome_chip bool +variants in_1kg bool +variants aaf_1kg_amr decimal(2,7) +variants aaf_1kg_eas decimal(2,7) +variants aaf_1kg_sas decimal(2,7) +variants aaf_1kg_afr decimal(2,7) +variants aaf_1kg_eur decimal(2,7) +variants aaf_1kg_all decimal(2,7) +variants grc text +variants gms_illumina float +variants gms_solid float +variants gms_iontorrent float +variants in_cse bool +variants encode_tfbs text +variants encode_dnaseI_cell_count integer +variants encode_dnaseI_cell_list text +variants encode_consensus_gm12878 text +variants encode_consensus_h1hesc text +variants encode_consensus_helas3 text +variants encode_consensus_hepg2 text +variants encode_consensus_huvec text +variants encode_consensus_k562 text +variants vista_enhancers text +variants cosmic_ids text +variants info blob +variants cadd_raw float +variants cadd_scaled float +variants fitcons float +variants in_exac bool +variants aaf_exac_all decimal(2,7) +variants aaf_adj_exac_all decimal(2,7) +variants aaf_adj_exac_afr decimal(2,7) +variants aaf_adj_exac_amr decimal(2,7) +variants aaf_adj_exac_eas decimal(2,7) +variants aaf_adj_exac_fin decimal(2,7) +variants aaf_adj_exac_nfe decimal(2,7) +variants aaf_adj_exac_oth decimal(2,7) +variants aaf_adj_exac_sas decimal(2,7) +variants exac_num_het int +variants exac_num_hom_alt int +variants exac_num_chroms int +variants max_aaf_all REAL +variant_impacts variant_id integer +variant_impacts anno_id integer +variant_impacts gene text +variant_impacts transcript text +variant_impacts is_exonic bool +variant_impacts is_coding bool +variant_impacts is_splicing bool +variant_impacts is_lof bool +variant_impacts exon text +variant_impacts codon_change text +variant_impacts aa_change text +variant_impacts aa_length text +variant_impacts biotype text +variant_impacts impact text +variant_impacts impact_so text +variant_impacts impact_severity text +variant_impacts polyphen_pred text +variant_impacts polyphen_score float +variant_impacts sift_pred text +variant_impacts sift_score float +samples sample_id integer +samples family_id text +samples name text +samples paternal_id text +samples maternal_id text +samples sex text +samples phenotype text +samples ethnicity text +gene_detailed uid integer +gene_detailed chrom text +gene_detailed gene text +gene_detailed is_hgnc bool +gene_detailed ensembl_gene_id text +gene_detailed transcript text +gene_detailed biotype text +gene_detailed transcript_status text +gene_detailed ccds_id text +gene_detailed hgnc_id text +gene_detailed entrez_id text +gene_detailed cds_length text +gene_detailed protein_length text +gene_detailed transcript_start text +gene_detailed transcript_end text +gene_detailed strand text +gene_detailed synonym text +gene_detailed rvis_pct float +gene_detailed mam_phenotype_id text +gene_summary uid integer +gene_summary chrom text +gene_summary gene text +gene_summary is_hgnc bool +gene_summary ensembl_gene_id text +gene_summary hgnc_id text +gene_summary transcript_min_start text +gene_summary transcript_max_end text +gene_summary strand text +gene_summary synonym text +gene_summary rvis_pct float +gene_summary mam_phenotype_id text +gene_summary in_cosmic_census bool