Mercurial > repos > iuc > gemini_gene_wise
diff test-data/util/README.rst @ 4:a26f0a30df65 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
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date | Fri, 14 Dec 2018 12:55:02 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/util/README.rst Fri Dec 14 12:55:02 2018 -0500 @@ -0,0 +1,25 @@ +Prepare Gemini annotation files and test databases for tool tests +================================================================= + +Each version of GEMINI is tied to a particular set of annotation files and +database version. + +The ``build-gemini-testdata.sh`` script in this folder should be used to +regenerate the annotation files and the test databases whenever the GEMINI +version required by the tool wrappers gets upgraded. + +The script requires a working GEMINI installation at the targeted version and +a folder with GEMINI's original annotation files, and can be executed with:: + + sh build-gemini-testdata.sh path/to/gemini/annotation/files + +It will regenerate the annotation files inside test-data/test-cache/gemini/data +and rebuild the *.db files in test-data. + +.. Note:: + + If the version of GEMINI that you are upgrading to uses a gemini-config.yaml + file that is different from the one found in test-data/test-cache you will + have to upgrade this file manually (make sure you leave the line + ``annotation_dir: gemini/data`` unchanged in the process). +