Mercurial > repos > iuc > gemini_gene_wise
diff gemini_macros.xml @ 3:d46017ddbf94 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 1f7418d74c6fcd61a050106ca5f9b66ab9a4c33d
author | iuc |
---|---|
date | Wed, 17 Oct 2018 13:29:48 -0400 |
parents | bc66ebfd4159 |
children | a26f0a30df65 |
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--- a/gemini_macros.xml Thu Nov 09 13:16:54 2017 -0500 +++ b/gemini_macros.xml Wed Oct 17 13:29:48 2018 -0400 @@ -88,14 +88,28 @@ <xml name="sanitize_query"> <sanitizer invalid_char=""> - <valid initial="string.printable"/> + <valid initial="string.printable"> + <remove value="'" /> + </valid> + <mapping initial="none"> + <add source="'" target="'"'"'" /> + </mapping> </sanitizer> </xml> + <token name="@MULTILN_SQL_EXPR_TO_CMDLN@"> + #set $sql_expr = str($multiline_sql_expr).strip() + #if str($sql_expr): + #set $sql_expr = $sql_expr.replace('\r\n', '\n') + #set $sql_expr = $sql_expr.replace('\r', '\n') + #set $sql_expr = $sql_expr.replace('\\\n', ' ') + $cmdln_param '$sql_expr' + #end if + </token> + <token name="@CMDLN_SQL_FILTER_FILTER_OPTION@"> #if str($filter.filter_selector) == 'yes' and $filter.filter: - #import pipes - --filter ${ pipes.quote( str( $filter.filter ) ) or "''" } + --filter '${ str( $filter.filter ) }' #end if </token>