comparison test-data/util/README.rst @ 0:3123ce7acd0e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
author iuc
date Fri, 11 Jan 2019 17:50:55 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:3123ce7acd0e
1 Prepare Gemini annotation files and test databases for tool tests
2 =================================================================
3
4 Each version of GEMINI is tied to a particular set of annotation files and
5 database version.
6
7 The ``build-gemini-testdata.sh`` script in this folder should be used to
8 regenerate the annotation files and the test databases whenever the GEMINI
9 version required by the tool wrappers gets upgraded.
10
11 The script requires a working GEMINI installation at the targeted version and
12 a folder with GEMINI's original annotation files, and can be executed with::
13
14 sh build-gemini-testdata.sh path/to/gemini/annotation/files
15
16 It will regenerate the annotation files inside test-data/test-cache/gemini/data
17 and rebuild the *.db files in test-data.
18
19 .. Note::
20
21 If the version of GEMINI that you are upgrading to uses a gemini-config.yaml
22 file that is different from the one found in test-data/test-cache you will
23 have to upgrade this file manually (make sure you leave the line
24 ``annotation_dir: gemini/data`` unchanged in the process).
25