based identification of candidate genes
gemini_macros.xml
0:
--min-kindreds ${family_wise.min_kindreds}
#end if
#if str($family_wise.families).strip():
#set $families = ','.join([f.strip() for f in $family_wise.families.split(',')])
--families "$families"
#end if
#if int($family_wise.per_variant_selection.min_dp) > 0:
-d ${family_wise.per_variant_selection.min_dp}
#end if
#if int($family_wise.per_variant_selection.min_gq) > 0:
--min-gq ${family_wise.per_variant_selection.min_gq}
#end if
#if int($family_wise.per_variant_selection.max_pl) > -1:
--gt-pl-max ${family_wise.per_variant_selection.max_pl}
#end if
#set $report = $oformat.report
@COLUMN_SELECT@
"${ infile }"
> "${ outfile }"
]]>