Mercurial > repos > iuc > gemini_lof_sieve
comparison gemini_lof_sieve.xml @ 5:dda378a72430 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 62ed732cba355e695181924a8ed4cce49ca21c59
| author | iuc |
|---|---|
| date | Fri, 11 Jan 2019 17:45:47 -0500 |
| parents | 93a391b4602c |
| children | 4b5123d51e8c |
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| 4:93a391b4602c | 5:dda378a72430 |
|---|---|
| 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1"> | 1 <tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@"> |
| 2 <description>Filter LoF variants by transcript position and type</description> | 2 <description>Filter LoF variants by transcript position and type</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>gemini_macros.xml</import> | 4 <import>gemini_macros.xml</import> |
| 5 <token name="@BINARY@">lof_sieve</token> | 5 <token name="@BINARY@">lof_sieve</token> |
| 6 </macros> | 6 </macros> |
| 8 <expand macro="stdio" /> | 8 <expand macro="stdio" /> |
| 9 <expand macro="version_command" /> | 9 <expand macro="version_command" /> |
| 10 <command> | 10 <command> |
| 11 <![CDATA[ | 11 <![CDATA[ |
| 12 gemini @BINARY@ | 12 gemini @BINARY@ |
| 13 "${ infile }" | 13 '$infile' |
| 14 > "${ outfile }" | 14 > '$outfile' |
| 15 ]]> | 15 ]]> |
| 16 </command> | 16 </command> |
| 17 <inputs> | 17 <inputs> |
| 18 <expand macro="infile" /> | 18 <expand macro="infile" /> |
| 19 </inputs> | 19 </inputs> |