view test-data/gemini_query_as_maf_result.tabular @ 7:2969a1f43b7d draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
author iuc
date Tue, 10 Mar 2020 06:15:27 -0400
parents
children
line wrap: on
line source

Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	HGVSp_Short	t_alt_count	t_ref_count	n_alt_count	n_ref_count
unknown			37	1	10583	10583		5'Flank	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	10611	10611		5'Flank	snp	C		G	novel		test										Somatic							p.=				
unknown			37	1	13302	13302		RNA	snp	C		T	novel		test										Somatic							p.=				
unknown			37	1	13327	13327		RNA	snp	G		C	novel		test										Somatic							p.=				
unknown			37	1	13958	13958		RNA	del	C		-	novel		test										Somatic							p.=				
unknown			37	1	13980	13980		RNA	snp	T		C	novel		test										Somatic							p.=				
unknown			37	1	30923	30923		3'Flank	snp	G		T	novel		test										Somatic							p.=				
unknown			37	1	46402	46402		IGR	ins	-		TGT	novel		test										Somatic							p.=				
unknown			37	1	47190	47190		IGR	ins	-		A	novel		test										Somatic							p.=				
unknown			37	1	51476	51476		IGR	snp	T		C	novel		test										Somatic							p.=				
unknown			37	1	51479	51479		IGR	snp	T		A	novel		test										Somatic							p.=				
unknown			37	1	51914	51914		IGR	snp	T		G	novel		test										Somatic							p.=				
unknown			37	1	51935	51935		IGR	snp	C		T	novel		test										Somatic							p.=				
unknown			37	1	51954	51954		IGR	snp	G		C	novel		test										Somatic							p.=				
unknown			37	1	52058	52058		IGR	snp	G		C	novel		test										Somatic							p.=				
unknown			37	1	52144	52144		IGR	snp	T		A	novel		test										Somatic							p.=				
unknown			37	1	52186	52188		IGR	del	TAA		-	novel		test										Somatic							p.=				
unknown			37	1	52238	52238		IGR	snp	T		G	novel		test										Somatic							p.=				
unknown			37	1	53235	53236		IGR	del	AT		-	novel		test										Somatic							p.=				
unknown			37	1	54353	54353		IGR	snp	C		A	novel		test										Somatic							p.=				
unknown			37	1	54421	54421		IGR	snp	A		G	novel		test										Somatic							p.=				
unknown			37	1	54490	54490		IGR	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	54676	54676		IGR	snp	C		T	novel		test										Somatic							p.=				
unknown			37	1	54753	54753		IGR	snp	T		G	novel		test										Somatic							p.=				
unknown			37	1	55164	55164		IGR	snp	C		A	novel		test										Somatic							p.=				
unknown			37	1	55249	55249		IGR	ins	-		TATGG	novel		test										Somatic							p.=				
unknown			37	1	55299	55299		IGR	snp	C		T	novel		test										Somatic							p.=				
unknown			37	1	55313	55313		IGR	snp	A		T	novel		test										Somatic							p.=				
unknown			37	1	55326	55326		IGR	snp	T		C	novel		test										Somatic							p.=				
unknown			37	1	55330	55330		IGR	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	55367	55367		IGR	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	55388	55388		IGR	snp	C		T	novel		test										Somatic							p.=				
unknown			37	1	55394	55394		IGR	snp	T		A	novel		test										Somatic							p.=				
unknown			37	1	55416	55416		IGR	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	55427	55427		IGR	snp	T		C	novel		test										Somatic							p.=				
unknown			37	1	55816	55816		IGR	snp	G		A	novel		test										Somatic							p.=				
unknown			37	1	55850	55850		IGR	snp	C		G	novel		test										Somatic							p.=				
unknown			37	1	55852	55852		IGR	snp	G		C	novel		test										Somatic							p.=