comparison gemini_mendel_errors.xml @ 4:00c2734b3bea draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

3:61343646155c

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
    <description>Identify candidate violations of Mendelian inheritance</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">mendel_errors</token>
    </macros>

        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" />
            <param name="columns" value="gene,ref,alt,impact" />
            <output name="outfile" file="gemini_mendel_errors_result.tabular" />
        </test>
    </tests>
    <help>
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4:00c2734b3bea

<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
    <description>Identify candidate violations of Mendelian inheritance</description>
    <macros>
        <import>gemini_macros.xml</import>
        <token name="@BINARY@">mendel_errors</token>
    </macros>

        <data name="outfile" format="tabular" />
    </outputs>
    <tests>
        <test>
            <param name="infile" value="gemini_de_novo_input.db" ftype="gemini.sqlite" />
            <conditional name="report">
                <param name="report_selector" value="column_filter" />
                <param name="columns" value="gene,ref,alt,impact" />
            </conditional>
            <output name="outfile">
                <assert_contents>
                    <has_line_matching expression="gene&#009;ref&#009;alt&#009;impact&#009;.*violation.*" />
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
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