comparison test-data/util/README.rst @ 4:69b5327a1f88 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313
author iuc
date Fri, 14 Dec 2018 13:02:36 -0500
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3:6b09debcfc49 4:69b5327a1f88
1 Prepare Gemini annotation files and test databases for tool tests
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4 Each version of GEMINI is tied to a particular set of annotation files and
5 database version.
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7 The ``build-gemini-testdata.sh`` script in this folder should be used to
8 regenerate the annotation files and the test databases whenever the GEMINI
9 version required by the tool wrappers gets upgraded.
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11 The script requires a working GEMINI installation at the targeted version and
12 a folder with GEMINI's original annotation files, and can be executed with::
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14 sh build-gemini-testdata.sh path/to/gemini/annotation/files
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16 It will regenerate the annotation files inside test-data/test-cache/gemini/data
17 and rebuild the *.db files in test-data.
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19 .. Note::
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21 If the version of GEMINI that you are upgrading to uses a gemini-config.yaml
22 file that is different from the one found in test-data/test-cache you will
23 have to upgrade this file manually (make sure you leave the line
24 ``annotation_dir: gemini/data`` unchanged in the process).
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