Mercurial > repos > iuc > gemini_pathways
comparison gemini_macros.xml @ 8:9551b3da9f5d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
author | iuc |
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date | Wed, 13 Jul 2022 15:24:14 +0000 |
parents | c63b7eefb07a |
children |
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7:9199331c3421 | 8:9551b3da9f5d |
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1 <macros> | 1 <macros> |
2 <!-- gemini version to be used --> | 2 <!-- gemini version to be used --> |
3 <token name="@VERSION@">0.20.1</token> | 3 <token name="@VERSION@">0.20.1</token> |
4 <!-- minimal annotation files version required by this version of gemini --> | 4 <!-- minimal annotation files version required by this version of gemini --> |
5 <token name="@DB_VERSION@">200</token> | 5 <token name="@DB_VERSION@">200</token> |
6 | |
7 <xml name="bio_tools"> | |
8 <xrefs> | |
9 <xref type="bio.tools">gemini</xref> | |
10 </xrefs> | |
11 </xml> | |
6 | 12 |
7 <xml name="requirements"> | 13 <xml name="requirements"> |
8 <requirements> | 14 <requirements> |
9 <requirement type="package" version="@VERSION@">gemini</requirement> | 15 <requirement type="package" version="@VERSION@">gemini</requirement> |
10 <yield /> | 16 <yield /> |
176 | 182 |
177 <xml name="region_filter"> | 183 <xml name="region_filter"> |
178 <repeat name="regions" title="Region Filter" default="0" min="0" | 184 <repeat name="regions" title="Region Filter" default="0" min="0" |
179 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported."> | 185 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported."> |
180 <param name="chrom" type="text" label="Chromosome"> | 186 <param name="chrom" type="text" label="Chromosome"> |
181 <validator type="expression" message="A chromosome identifier is required when specifying a region filter">value.strip()</validator> | 187 <validator type="regex" message="A chromosome identifier is required when specifying a region filter. It should start with 'chr'">^chr[0-9a-zA-Z: _.-]+</validator> |
182 </param> | 188 </param> |
183 <param name="start" type="text" label="Region Start"> | 189 <param name="start" type="text" label="Region Start"> |
184 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator> | 190 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator> |
185 </param> | 191 </param> |
186 <param name="stop" type="text" label="Region End"> | 192 <param name="stop" type="text" label="Region End"> |