Mercurial > repos > iuc > gemini_pathways
comparison gemini_macros.xml @ 8:9551b3da9f5d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
| author | iuc |
|---|---|
| date | Wed, 13 Jul 2022 15:24:14 +0000 |
| parents | c63b7eefb07a |
| children |
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| 7:9199331c3421 | 8:9551b3da9f5d |
|---|---|
| 1 <macros> | 1 <macros> |
| 2 <!-- gemini version to be used --> | 2 <!-- gemini version to be used --> |
| 3 <token name="@VERSION@">0.20.1</token> | 3 <token name="@VERSION@">0.20.1</token> |
| 4 <!-- minimal annotation files version required by this version of gemini --> | 4 <!-- minimal annotation files version required by this version of gemini --> |
| 5 <token name="@DB_VERSION@">200</token> | 5 <token name="@DB_VERSION@">200</token> |
| 6 | |
| 7 <xml name="bio_tools"> | |
| 8 <xrefs> | |
| 9 <xref type="bio.tools">gemini</xref> | |
| 10 </xrefs> | |
| 11 </xml> | |
| 6 | 12 |
| 7 <xml name="requirements"> | 13 <xml name="requirements"> |
| 8 <requirements> | 14 <requirements> |
| 9 <requirement type="package" version="@VERSION@">gemini</requirement> | 15 <requirement type="package" version="@VERSION@">gemini</requirement> |
| 10 <yield /> | 16 <yield /> |
| 176 | 182 |
| 177 <xml name="region_filter"> | 183 <xml name="region_filter"> |
| 178 <repeat name="regions" title="Region Filter" default="0" min="0" | 184 <repeat name="regions" title="Region Filter" default="0" min="0" |
| 179 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported."> | 185 help="Filter variant sites by their position in the genome. If multiple Region Filters are specified, all variants that fall in ONE of the regions are reported."> |
| 180 <param name="chrom" type="text" label="Chromosome"> | 186 <param name="chrom" type="text" label="Chromosome"> |
| 181 <validator type="expression" message="A chromosome identifier is required when specifying a region filter">value.strip()</validator> | 187 <validator type="regex" message="A chromosome identifier is required when specifying a region filter. It should start with 'chr'">^chr[0-9a-zA-Z: _.-]+</validator> |
| 182 </param> | 188 </param> |
| 183 <param name="start" type="text" label="Region Start"> | 189 <param name="start" type="text" label="Region Start"> |
| 184 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator> | 190 <validator type="expression" message="an integer number is required">not value or value.isdigit()</validator> |
| 185 </param> | 191 </param> |
| 186 <param name="stop" type="text" label="Region End"> | 192 <param name="stop" type="text" label="Region End"> |