diff gemini_qc.xml @ 4:246ad1a7ff20 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

--- a/gemini_qc.xml	Wed Oct 17 13:30:32 2018 -0400
+++ b/gemini_qc.xml	Fri Dec 14 12:42:37 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Quality control tool</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -27,9 +27,16 @@
     </outputs>
     <tests>
         <test>
-            <param name="infile" value="gemini_amend_input.db" ftype="gemini.sqlite" />
-            <param name="chrom" value="chrX" ftype="gemini.sqlite" />
-            <output name="outfile" file="gemini_qc_result.tabular" />
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
+            <!-- Testing needs to be done on a chromsome that exists
+            in the test database even if that has little biological meaning
+            -->
+            <param name="chrom" value="chr1" ftype="gemini.sqlite" />
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="sample&#009;sex&#009;.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>