Mercurial > repos > iuc > gemini_query

diff gemini_query.xml @ 8:77a1e60fd1de draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
author iuc
date Wed, 13 Jul 2022 15:22:01 +0000
parents da74170c55c7
children
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--- a/gemini_query.xml	Tue Mar 10 06:14:55 2020 -0400
+++ b/gemini_query.xml	Wed Jul 13 15:22:01 2022 +0000
@@ -1,5 +1,6 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@+galaxy1">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@+galaxy2">
     <description>Querying the GEMINI database</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>gemini_macros.xml</import>
         <token name="@BINARY@">query</token>
@@ -387,6 +388,18 @@
             </section>
             <output name="outfile" file="gemini_query_as_maf_result.tabular" />
         </test>
+        <test>
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
+            <conditional name="query">
+                <param name="interface" value="basic" />
+                <repeat name="regions">
+                    <param name="chrom" value="chr1"/>
+                    <param name="start" value="0"/>
+                    <param name="end" value="13327"/>
+                </repeat>
+            </conditional>
+            <output name="outfile" file="gemini_region_filter.tabular" />
+        </test>
     </tests>
     <help>
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