# HG changeset patch
# User iuc
# Date 1657725721 0
# Node ID 77a1e60fd1de9803107e6badc56dbd02002478a8
# Parent da74170c55c74bc93f7fed548553de8477ac4f91
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
diff -r da74170c55c7 -r 77a1e60fd1de gemini_macros.xml
--- a/gemini_macros.xml Tue Mar 10 06:14:55 2020 -0400
+++ b/gemini_macros.xml Wed Jul 13 15:22:01 2022 +0000
@@ -4,6 +4,12 @@
200
+
+
+ gemini
+
+
+
gemini
@@ -178,7 +184,7 @@
- value.strip()
+ ^chr[0-9a-zA-Z: _.-]+
not value or value.isdigit()
diff -r da74170c55c7 -r 77a1e60fd1de gemini_query.xml
--- a/gemini_query.xml Tue Mar 10 06:14:55 2020 -0400
+++ b/gemini_query.xml Wed Jul 13 15:22:01 2022 +0000
@@ -1,5 +1,6 @@
-
+
Querying the GEMINI database
+
gemini_macros.xml
query
@@ -387,6 +388,18 @@
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
\ No newline at end of file
diff -r da74170c55c7 -r 77a1e60fd1de test-data/gemini_region_filter.tabular
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gemini_region_filter.tabular Wed Jul 13 15:22:01 2022 +0000
@@ -0,0 +1,39 @@
+chrom start end ref alt gene impact
+chr1 10582 10583 G A DDX11L1 upstream_gene_variant
+chr1 10610 10611 C G DDX11L1 upstream_gene_variant
+chr1 13301 13302 C T DDX11L1 exon_variant
+chr1 13326 13327 G C DDX11L1 exon_variant
+chr1 13956 13958 TC T DDX11L1 exon_variant
+chr1 13979 13980 T C DDX11L1 exon_variant
+chr1 30922 30923 G T FAM138A downstream_gene_variant
+chr1 46401 46402 C CTGT None intergenic_variant
+chr1 47189 47190 G GA None intergenic_variant
+chr1 51475 51476 T C None intergenic_variant
+chr1 51478 51479 T A None intergenic_variant
+chr1 51913 51914 T G None intergenic_variant
+chr1 51934 51935 C T None intergenic_variant
+chr1 51953 51954 G C None intergenic_variant
+chr1 52057 52058 G C None intergenic_variant
+chr1 52143 52144 T A None intergenic_variant
+chr1 52184 52188 TTAA T None intergenic_variant
+chr1 52237 52238 T G None intergenic_variant
+chr1 53233 53236 CAT C None intergenic_variant
+chr1 54352 54353 C A None intergenic_variant
+chr1 54420 54421 A G None intergenic_variant
+chr1 54489 54490 G A None intergenic_variant
+chr1 54675 54676 C T None intergenic_variant
+chr1 54752 54753 T G None intergenic_variant
+chr1 55163 55164 C A None intergenic_variant
+chr1 55248 55249 C CTATGG None intergenic_variant
+chr1 55298 55299 C T None intergenic_variant
+chr1 55312 55313 A T None intergenic_variant
+chr1 55325 55326 T C None intergenic_variant
+chr1 55329 55330 G A None intergenic_variant
+chr1 55366 55367 G A None intergenic_variant
+chr1 55387 55388 C T None intergenic_variant
+chr1 55393 55394 T A None intergenic_variant
+chr1 55415 55416 G A None intergenic_variant
+chr1 55426 55427 T C None intergenic_variant
+chr1 55815 55816 G A None intergenic_variant
+chr1 55849 55850 C G None intergenic_variant
+chr1 55851 55852 G C None intergenic_variant