diff gemini_region.xml @ 4:601b70d10d92 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 283362494058ed64143b1f27afb447b8a1cb4313

--- a/gemini_region.xml	Wed Oct 17 13:32:09 2018 -0400
+++ b/gemini_region.xml	Fri Dec 14 12:44:11 2018 -0500
@@ -1,4 +1,4 @@
-<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.0">
+<tool id="gemini_@BINARY@" name="GEMINI @BINARY@" version="@VERSION@.1">
     <description>Extracting variants from specific regions or genes</description>
     <macros>
         <import>gemini_macros.xml</import>
@@ -61,11 +61,19 @@
     </outputs>
     <tests>
         <test>
-            <param name="infile" value="gemini_burden_input.db" ftype="gemini.sqlite" />
+            <param name="infile" value="gemini_load_result1.db" ftype="gemini.sqlite" />
             <param name="region_selector" value="--reg" />
-            <param name="region" value="chr10:48000000-49000000" />
-            <param name="columns" value="chrom,start,gene" />
-            <output name="outfile" file="gemini_region_result.tabular" />
+            <param name="region" value="chr3:187000000-187500000" />
+            <param name="header" value="True" />
+            <conditional name="report">
+                <param name="report_selector" value="column_filter" />
+                <param name="columns" value="chrom,start,gene" />
+            </conditional>
+            <output name="outfile">
+                <assert_contents>
+                    <has_line_matching expression="chrom&#009;start&#009;gene.*" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help>