Mercurial > repos > iuc > gemini_set_somatic

annotate test-data/gemini_query_as_maf_result.tabular @ 8:7814e39409d1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit f7bdf08922aaf4119aefe7041e754a69cf64aebd
author iuc
date Wed, 13 Jul 2022 15:32:50 +0000
parents e4e2128460e3
children
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e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
iuc
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1 Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer HGVSp_Short t_alt_count t_ref_count n_alt_count n_ref_count
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
iuc
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2 unknown 37 1 10583 10583 5'Flank snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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3 unknown 37 1 10611 10611 5'Flank snp C G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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4 unknown 37 1 13302 13302 RNA snp C T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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5 unknown 37 1 13327 13327 RNA snp G C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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6 unknown 37 1 13958 13958 RNA del C - novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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7 unknown 37 1 13980 13980 RNA snp T C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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8 unknown 37 1 30923 30923 3'Flank snp G T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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9 unknown 37 1 46402 46402 IGR ins - TGT novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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10 unknown 37 1 47190 47190 IGR ins - A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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11 unknown 37 1 51476 51476 IGR snp T C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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12 unknown 37 1 51479 51479 IGR snp T A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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13 unknown 37 1 51914 51914 IGR snp T G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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14 unknown 37 1 51935 51935 IGR snp C T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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15 unknown 37 1 51954 51954 IGR snp G C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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16 unknown 37 1 52058 52058 IGR snp G C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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17 unknown 37 1 52144 52144 IGR snp T A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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18 unknown 37 1 52186 52188 IGR del TAA - novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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19 unknown 37 1 52238 52238 IGR snp T G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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20 unknown 37 1 53235 53236 IGR del AT - novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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21 unknown 37 1 54353 54353 IGR snp C A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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22 unknown 37 1 54421 54421 IGR snp A G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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23 unknown 37 1 54490 54490 IGR snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
iuc
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24 unknown 37 1 54676 54676 IGR snp C T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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25 unknown 37 1 54753 54753 IGR snp T G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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26 unknown 37 1 55164 55164 IGR snp C A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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27 unknown 37 1 55249 55249 IGR ins - TATGG novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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28 unknown 37 1 55299 55299 IGR snp C T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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29 unknown 37 1 55313 55313 IGR snp A T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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30 unknown 37 1 55326 55326 IGR snp T C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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31 unknown 37 1 55330 55330 IGR snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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32 unknown 37 1 55367 55367 IGR snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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33 unknown 37 1 55388 55388 IGR snp C T novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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34 unknown 37 1 55394 55394 IGR snp T A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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35 unknown 37 1 55416 55416 IGR snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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36 unknown 37 1 55427 55427 IGR snp T C novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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37 unknown 37 1 55816 55816 IGR snp G A novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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38 unknown 37 1 55850 55850 IGR snp C G novel test Somatic p.=
e4e2128460e3 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 5ea789e5342c3ad1afd2e0068c88f2b6dc4f7246"
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39 unknown 37 1 55852 55852 IGR snp G C novel test Somatic p.=