Mercurial > repos > iuc > gemini_set_somatic

comparison test-data/gemini_dbinfo_result.tabular @ 0:230c975e7759 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/gemini commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
author iuc
date Thu, 18 Feb 2016 08:57:23 -0500
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-1:000000000000 0:230c975e7759
1 table_name column_name type
2 variants chrom text
3 variants start integer
4 variants end integer
5 variants vcf_id text
6 variants variant_id integer
7 variants anno_id integer
8 variants ref text
9 variants alt text
10 variants qual float
11 variants filter text
12 variants type text
13 variants sub_type text
14 variants gts blob
15 variants gt_types blob
16 variants gt_phases blob
17 variants gt_depths blob
18 variants gt_ref_depths blob
19 variants gt_alt_depths blob
20 variants gt_quals blob
21 variants gt_copy_numbers blob
22 variants gt_phred_ll_homref blob
23 variants gt_phred_ll_het blob
24 variants gt_phred_ll_homalt blob
25 variants call_rate float
26 variants in_dbsnp bool
27 variants rs_ids text
28 variants sv_cipos_start_left integer
29 variants sv_cipos_end_left integer
30 variants sv_cipos_start_right integer
31 variants sv_cipos_end_right integer
32 variants sv_length integer
33 variants sv_is_precise bool
34 variants sv_tool text
35 variants sv_evidence_type text
36 variants sv_event_id text
37 variants sv_mate_id text
38 variants sv_strand text
39 variants in_omim bool
40 variants clinvar_sig text
41 variants clinvar_disease_name text
42 variants clinvar_dbsource text
43 variants clinvar_dbsource_id text
44 variants clinvar_origin text
45 variants clinvar_dsdb text
46 variants clinvar_dsdbid text
47 variants clinvar_disease_acc text
48 variants clinvar_in_locus_spec_db bool
49 variants clinvar_on_diag_assay bool
50 variants clinvar_causal_allele text
51 variants pfam_domain text
52 variants cyto_band text
53 variants rmsk text
54 variants in_cpg_island bool
55 variants in_segdup bool
56 variants is_conserved bool
57 variants gerp_bp_score float
58 variants gerp_element_pval float
59 variants num_hom_ref integer
60 variants num_het integer
61 variants num_hom_alt integer
62 variants num_unknown integer
63 variants aaf real
64 variants hwe decimal(2,7)
65 variants inbreeding_coeff decimal(2,7)
66 variants pi decimal(2,7)
67 variants recomb_rate decimal(2,7)
68 variants gene text
69 variants transcript text
70 variants is_exonic bool
71 variants is_coding bool
72 variants is_splicing bool
73 variants is_lof bool
74 variants exon text
75 variants codon_change text
76 variants aa_change text
77 variants aa_length text
78 variants biotype text
79 variants impact text
80 variants impact_so text
81 variants impact_severity text
82 variants polyphen_pred text
83 variants polyphen_score float
84 variants sift_pred text
85 variants sift_score float
86 variants anc_allele text
87 variants rms_bq float
88 variants cigar text
89 variants depth integer
90 variants strand_bias float
91 variants rms_map_qual float
92 variants in_hom_run integer
93 variants num_mapq_zero integer
94 variants num_alleles integer
95 variants num_reads_w_dels float
96 variants haplotype_score float
97 variants qual_depth float
98 variants allele_count integer
99 variants allele_bal float
100 variants in_hm2 bool
101 variants in_hm3 bool
102 variants is_somatic bool
103 variants somatic_score float
104 variants in_esp bool
105 variants aaf_esp_ea decimal(2,7)
106 variants aaf_esp_aa decimal(2,7)
107 variants aaf_esp_all decimal(2,7)
108 variants exome_chip bool
109 variants in_1kg bool
110 variants aaf_1kg_amr decimal(2,7)
111 variants aaf_1kg_eas decimal(2,7)
112 variants aaf_1kg_sas decimal(2,7)
113 variants aaf_1kg_afr decimal(2,7)
114 variants aaf_1kg_eur decimal(2,7)
115 variants aaf_1kg_all decimal(2,7)
116 variants grc text
117 variants gms_illumina float
118 variants gms_solid float
119 variants gms_iontorrent float
120 variants in_cse bool
121 variants encode_tfbs text
122 variants encode_dnaseI_cell_count integer
123 variants encode_dnaseI_cell_list text
124 variants encode_consensus_gm12878 text
125 variants encode_consensus_h1hesc text
126 variants encode_consensus_helas3 text
127 variants encode_consensus_hepg2 text
128 variants encode_consensus_huvec text
129 variants encode_consensus_k562 text
130 variants vista_enhancers text
131 variants cosmic_ids text
132 variants info blob
133 variants cadd_raw float
134 variants cadd_scaled float
135 variants fitcons float
136 variants in_exac bool
137 variants aaf_exac_all decimal(2,7)
138 variants aaf_adj_exac_all decimal(2,7)
139 variants aaf_adj_exac_afr decimal(2,7)
140 variants aaf_adj_exac_amr decimal(2,7)
141 variants aaf_adj_exac_eas decimal(2,7)
142 variants aaf_adj_exac_fin decimal(2,7)
143 variants aaf_adj_exac_nfe decimal(2,7)
144 variants aaf_adj_exac_oth decimal(2,7)
145 variants aaf_adj_exac_sas decimal(2,7)
146 variants exac_num_het int
147 variants exac_num_hom_alt int
148 variants exac_num_chroms int
149 variants max_aaf_all REAL
150 variant_impacts variant_id integer
151 variant_impacts anno_id integer
152 variant_impacts gene text
153 variant_impacts transcript text
154 variant_impacts is_exonic bool
155 variant_impacts is_coding bool
156 variant_impacts is_splicing bool
157 variant_impacts is_lof bool
158 variant_impacts exon text
159 variant_impacts codon_change text
160 variant_impacts aa_change text
161 variant_impacts aa_length text
162 variant_impacts biotype text
163 variant_impacts impact text
164 variant_impacts impact_so text
165 variant_impacts impact_severity text
166 variant_impacts polyphen_pred text
167 variant_impacts polyphen_score float
168 variant_impacts sift_pred text
169 variant_impacts sift_score float
170 samples sample_id integer
171 samples family_id text
172 samples name text
173 samples paternal_id text
174 samples maternal_id text
175 samples sex text
176 samples phenotype text
177 samples ethnicity text
178 gene_detailed uid integer
179 gene_detailed chrom text
180 gene_detailed gene text
181 gene_detailed is_hgnc bool
182 gene_detailed ensembl_gene_id text
183 gene_detailed transcript text
184 gene_detailed biotype text
185 gene_detailed transcript_status text
186 gene_detailed ccds_id text
187 gene_detailed hgnc_id text
188 gene_detailed entrez_id text
189 gene_detailed cds_length text
190 gene_detailed protein_length text
191 gene_detailed transcript_start text
192 gene_detailed transcript_end text
193 gene_detailed strand text
194 gene_detailed synonym text
195 gene_detailed rvis_pct float
196 gene_detailed mam_phenotype_id text
197 gene_summary uid integer
198 gene_summary chrom text
199 gene_summary gene text
200 gene_summary is_hgnc bool
201 gene_summary ensembl_gene_id text
202 gene_summary hgnc_id text
203 gene_summary transcript_min_start text
204 gene_summary transcript_max_end text
205 gene_summary strand text
206 gene_summary synonym text
207 gene_summary rvis_pct float
208 gene_summary mam_phenotype_id text
209 gene_summary in_cosmic_census bool