Mercurial > repos > iuc > genetrack
comparison genetrack.py @ 3:41887967ef14 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/genetrack commit 19ea4feff5ccf3744c549b9a67259947a1cb90ba
author | iuc |
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date | Sat, 21 Jan 2017 14:41:43 -0500 |
parents | 25cd59a002d9 |
children |
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2:aaca27a5263b | 3:41887967ef14 |
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2 genetrack.py | 2 genetrack.py |
3 | 3 |
4 Input: either scidx or gff format of reads | 4 Input: either scidx or gff format of reads |
5 Output: Called peaks in gff format | 5 Output: Called peaks in gff format |
6 """ | 6 """ |
7 import csv | |
7 import optparse | 8 import optparse |
8 import csv | |
9 import os | 9 import os |
10 | |
10 import genetrack_util | 11 import genetrack_util |
11 | 12 |
12 CHUNK_SIZE = 10000000 | 13 CHUNK_SIZE = 10000000 |
13 | 14 |
14 | 15 |