Mercurial > repos > iuc > genomescope

changeset 4:0bace381c9fd draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/genomescope commit eb1dd55c41bf179ad72bdbd5560bd25efa35a0bc
author iuc
date Wed, 03 Dec 2025 15:37:44 +0000
parents 460fad600dce
children
files genomescope.xml
diffstat 1 files changed, 26 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/genomescope.xml	Fri Aug 02 15:39:12 2024 +0000
+++ b/genomescope.xml	Wed Dec 03 15:37:44 2025 +0000
@@ -1,8 +1,9 @@
-<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.01">
+<tool id="genomescope" name="GenomeScope" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>reference-free genome profiling</description>
     <macros>
-        <token name="@TOOL_VERSION@">2.0.1</token>
+        <token name="@TOOL_VERSION@">2.1.0</token>
         <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@PROFILE@">21.01</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">genomescope2</requirement>
@@ -128,10 +129,26 @@
                     <has_size value="210889" delta="6000"/>
                 </assert_contents>
             </output>
-            <output name="model" file="genomescope-out1-1.txt" ftype="txt" lines_diff="2"/>
-            <output name="summary" file="genomescope-out1-2.txt" ftype="txt" lines_diff="2"/>
-            <output name="progress" file="genomescope-out1-3.txt" ftype="txt" lines_diff="2"/>
-            <output name="model_params" file="genomescope-out1-1.tab" ftype="tabular"/>
+            <output name="model" ftype="txt">
+                <assert_contents>
+                    <has_n_lines n="19"/>
+                </assert_contents>
+            </output>
+            <output name="summary" ftype="txt">
+                <assert_contents>
+                    <has_n_lines n="15"/>
+                </assert_contents>
+            </output>
+            <output name="progress" ftype="txt">
+                <assert_contents>
+                    <has_n_lines n="6"/>
+                </assert_contents>
+            </output>
+            <output name="model_params" ftype="tabular">
+                <assert_contents>
+                    <has_n_lines n="1"/>
+                </assert_contents>
+            </output>
         </test>
         <!--Test initial_repetitiveness option-->
         <test expect_num_outputs="5">
@@ -167,6 +184,7 @@
                 <assert_contents>
                     <has_line line="initial repetitiveness = 0.1"/>
                     <has_text text="Homozygous (aa)               98.9538%          98.967%"/>
+                    <has_n_lines n="15"/>
                 </assert_contents>
             </output>
         </test>
@@ -204,7 +222,8 @@
             <output name="summary" ftype="txt" lines_diff="2">
                 <assert_contents>
                     <has_line line="initial heterozygosities = 0.04,0.01"/>
-                    <has_text text="Homozygous (aaa)              7.70599%          100%"/>
+                    <has_text text="Homozygous (aaa)              5.92481%          100%"/>
+                    <has_n_lines n="17"/>
                 </assert_contents>
             </output>
         </test>