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comparison test-data/resampling-sites1.txt @ 7:661c164268cc draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
author iuc
date Tue, 27 May 2025 20:00:00 +0000
parents c1751dfb4d94
children
comparison
equal deleted inserted replaced
6:07d7991bf205 7:661c164268cc
1 #Resampling 1 #Resampling
2 #Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit resampling transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig transit-in1_smol.prot resampling-sites1_smol.txt 2 #Console: python3 /usr/local/bin/transit resampling control_file_0.wig,control_file_1.wig,control_file_2.wig input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -iC 0.0 -n TTR -s 1000
3 #Control Data: b'transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig' 3 #Parameters: samples=1000, norm=TTR, histograms=False, adaptive=False, excludeZeros=False, pseudocounts=1.0, LOESS=False, trim_Nterm=0.0, trim_Cterm=0.0
4 #Experimental Data: b'transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig' 4 #Control Data: b'control_file_0.wig,control_file_1.wig,control_file_2.wig'
5 #Annotation path: b'transit-in1_smol.prot' 5 #Experimental Data: b'input_file_0.wig,input_file_1.wig'
6 #Time: 64.01395511627197 6 #Annotation path: b'annotation.dat'
7 #Time: 9.306800127029419
7 #Orf Name Desc Sites Mean Ctrl Mean Exp log2FC Sum Ctrl Sum Exp Delta Mean p-value Adj. p-value 8 #Orf Name Desc Sites Mean Ctrl Mean Exp log2FC Sum Ctrl Sum Exp Delta Mean p-value Adj. p-value
8 Rv0001 dnaA chromosomal replication initiation protein 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 9 Rv0001 dnaA chromosomal replication initiation protein 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
9 Rv0002 dnaN DNA polymerase III subunit beta 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 10 Rv0002 dnaN DNA polymerase III subunit beta 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
10 Rv0003 recF recombination protein F 35 22.6 27.7 0.30 1579.1 2907.67 5.1 0.66630 1.00000 11 Rv0003 recF recombination protein F 35 27.7 22.6 -0.28 2907.7 1579.07 -5.1 0.66000 1.00000
11 Rv0004 - hypothetical protein Rv0004 7 2.9 0.0 -1.97 40.8 0.00 -2.9 0.40810 1.00000 12 Rv0004 - hypothetical protein Rv0004 7 0.0 2.9 1.97 0.0 40.75 2.9 0.40100 1.00000
12 Rv0005 gyrB DNA gyrase subunit B 42 11.3 3.6 -1.66 951.9 450.90 -7.8 0.40760 1.00000 13 Rv0005 gyrB DNA gyrase subunit B 42 3.6 11.3 1.43 450.9 951.88 7.8 0.40100 1.00000
13 Rv0006 gyrA DNA gyrase subunit A 45 5.7 2.4 -1.22 511.8 330.34 -3.2 0.50960 1.00000 14 Rv0006 gyrA DNA gyrase subunit A 45 2.4 5.7 0.96 330.3 511.83 3.2 0.51200 1.00000
14 Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 10 16.2 53.7 1.73 323.1 1610.25 37.5 0.47710 1.00000 15 Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 10 53.7 16.2 -1.67 1610.3 323.06 -37.5 0.49200 1.00000
15 Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 235.5 195.4 -0.27 1884.3 2345.17 -40.1 0.74730 1.00000 16 Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 195.4 235.5 0.27 2345.2 1884.31 40.1 0.73800 1.00000
16 Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 175.3 89.0 -0.98 2453.5 1869.11 -86.2 0.24570 1.00000 17 Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 89.0 175.3 0.97 1869.1 2453.52 86.2 0.26100 1.00000
17 Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 179.3 172.9 -0.05 3586.6 5186.87 -6.4 0.94490 1.00000 18 Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 172.9 179.3 0.05 5186.9 3586.59 6.4 0.94600 1.00000
18 Rv0011c - putative septation inhibitor protein 3 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 19 Rv0011c - putative septation inhibitor protein 3 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
19 Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 247.6 104.1 -1.25 7922.3 4996.36 -143.5 0.02820 1.00000 20 Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 104.1 247.6 1.24 4996.4 7922.27 143.5 0.02800 1.00000
20 Rv0013 trpG para-aminobenzoate synthase component II 15 0.7 2.9 2.03 21.1 129.04 2.2 0.90500 1.00000 21 Rv0013 trpG para-aminobenzoate synthase component II 15 2.9 0.7 -1.18 129.0 21.13 -2.2 0.90400 1.00000
21 Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 24 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 22 Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 24 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
22 Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 23.6 12.4 -0.92 753.9 596.59 -11.1 0.70820 1.00000 23 Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 12.4 23.6 0.87 596.6 753.90 11.1 0.71200 1.00000
23 Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 19.4 12.9 -0.58 1436.0 1436.86 -6.5 0.43400 1.00000 24 Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 12.9 19.4 0.55 1436.9 1436.03 6.5 0.44600 1.00000
24 Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 50.3 50.0 -0.01 2718.6 4051.86 -0.3 0.98690 1.00000 25 Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 50.0 50.3 0.01 4051.9 2718.62 0.3 0.98600 1.00000
25 Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 15.5 12.4 -0.32 777.2 933.35 -3.1 0.72310 1.00000 26 Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 12.4 15.5 0.30 933.4 777.22 3.1 0.68900 1.00000
26 Rv0019c - hypothetical protein Rv0019c 13 178.0 36.5 -2.29 4628.3 1421.57 -141.6 0.00390 1.00000 27 Rv0019c - hypothetical protein Rv0019c 13 36.5 178.0 2.26 1421.6 4628.28 141.6 0.00300 1.00000
27 Rv0020c TB39.8 hypothetical protein Rv0020c 52 12.7 17.5 0.47 1317.9 2736.79 4.9 0.63120 1.00000 28 Rv0020c TB39.8 hypothetical protein Rv0020c 52 17.5 12.7 -0.44 2736.8 1317.86 -4.9 0.64400 1.00000
28 Rv0021c - hypothetical protein Rv0021c 22 301.9 542.8 0.85 13281.7 35827.15 241.0 0.24080 1.00000 29 Rv0021c - hypothetical protein Rv0021c 22 542.8 301.9 -0.84 35827.1 13281.74 -241.0 0.23500 1.00000
29 Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 421.8 527.6 0.32 6749.0 12661.35 105.7 0.74770 1.00000 30 Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 527.6 421.8 -0.32 12661.4 6749.00 -105.7 0.75900 1.00000
30 Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 12 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 31 Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 12 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
31 Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 12 225.5 222.8 -0.02 5410.9 8019.31 -2.7 0.97750 1.00000 32 Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 12 222.8 225.5 0.02 8019.3 5410.92 2.7 0.98100 1.00000
32 Rv0025 - hypothetical protein Rv0025 7 90.1 275.8 1.61 1261.4 5790.99 185.7 0.03210 1.00000 33 Rv0025 - hypothetical protein Rv0025 7 275.8 90.1 -1.60 5791.0 1261.40 -185.7 0.03000 1.00000
33 Rv0026 - hypothetical protein Rv0026 14 154.7 166.7 0.11 4332.5 7000.58 11.9 0.83090 1.00000 34 Rv0026 - hypothetical protein Rv0026 14 166.7 154.7 -0.11 7000.6 4332.46 -11.9 0.85900 1.00000
34 Rv0027 - hypothetical protein Rv0027 5 42.4 9.2 -2.21 423.7 137.74 -33.2 0.17520 1.00000 35 Rv0027 - hypothetical protein Rv0027 5 9.2 42.4 2.09 137.7 423.67 33.2 0.17300 1.00000
35 Rv0028 - hypothetical protein Rv0028 5 54.5 68.7 0.33 544.9 1030.50 14.2 0.79850 1.00000 36 Rv0028 - hypothetical protein Rv0028 5 68.7 54.5 -0.33 1030.5 544.86 -14.2 0.78600 1.00000
36 Rv0029 - hypothetical protein Rv0029 18 163.6 682.7 2.06 5889.3 36863.16 519.1 0.23780 1.00000 37 Rv0029 - hypothetical protein Rv0029 18 682.7 163.6 -2.05 36863.2 5889.34 -519.1 0.22500 1.00000
37 Rv0030 - hypothetical protein Rv0030 5 24.8 13.7 -0.86 247.9 205.46 -11.1 0.62930 1.00000 38 Rv0030 - hypothetical protein Rv0030 5 13.7 24.8 0.81 205.5 247.86 11.1 0.61900 1.00000
38 Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 1 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 39 Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 1 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
39 Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 152.1 215.1 0.50 17336.4 36778.48 63.0 0.33450 1.00000 40 Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 215.1 152.1 -0.50 36778.5 17336.39 -63.0 0.33100 1.00000
40 Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 186.7 250.2 0.42 1120.3 2251.39 63.4 0.58260 1.00000 41 Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 250.2 186.7 -0.42 2251.4 1120.32 -63.4 0.60000 1.00000
41 Rv0034 - hypothetical protein Rv0034 5 189.1 283.3 0.58 1891.1 4250.17 94.2 0.46040 1.00000 42 Rv0034 - hypothetical protein Rv0034 5 283.3 189.1 -0.58 4250.2 1891.15 -94.2 0.47600 1.00000
42 Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 250.4 251.4 0.01 12521.7 18851.74 0.9 0.98980 1.00000 43 Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 251.4 250.4 -0.01 18851.7 12521.72 -0.9 0.99400 1.00000
43 Rv0036c - hypothetical protein Rv0036c 4 733.0 435.1 -0.75 5864.4 5221.17 -298.0 0.30590 1.00000 44 Rv0036c - hypothetical protein Rv0036c 4 435.1 733.0 0.75 5221.2 5864.39 298.0 0.33800 1.00000
44 Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 20 176.5 306.5 0.80 7061.9 18388.59 129.9 0.35200 1.00000 45 Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 20 306.5 176.5 -0.79 18388.6 7061.90 -129.9 0.34700 1.00000
45 Rv0038 - hypothetical protein Rv0038 7 293.8 416.8 0.50 4112.5 8752.08 123.0 0.49790 1.00000 46 Rv0038 - hypothetical protein Rv0038 7 416.8 293.8 -0.50 8752.1 4112.51 -123.0 0.49500 1.00000
46 Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 312.6 426.7 0.45 2500.4 5120.20 114.1 0.70430 1.00000 47 Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 426.7 312.6 -0.45 5120.2 2500.44 -114.1 0.72800 1.00000
47 Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 9 46.0 130.8 1.51 827.9 3531.56 84.8 0.16480 1.00000 48 Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 9 130.8 46.0 -1.49 3531.6 827.95 -84.8 0.16900 1.00000
48 Rv0041 leuS leucyl-tRNA synthetase 72 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 49 Rv0041 leuS leucyl-tRNA synthetase 72 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
49 Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 60.3 41.7 -0.53 603.0 625.40 -18.6 0.62690 1.00000 50 Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 41.7 60.3 0.52 625.4 603.01 18.6 0.64900 1.00000
50 Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 10 98.3 68.3 -0.52 1966.2 2050.19 -30.0 0.45820 1.00000 51 Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 10 68.3 98.3 0.52 2050.2 1966.16 30.0 0.47300 1.00000
51 Rv0044c - POSSIBLE OXIDOREDUCTASE 20 234.2 187.4 -0.32 9368.1 11246.32 -46.8 0.54380 1.00000 52 Rv0044c - POSSIBLE OXIDOREDUCTASE 20 187.4 234.2 0.32 11246.3 9368.12 46.8 0.52900 1.00000
52 Rv0045c - POSSIBLE HYDROLASE 7 309.7 278.0 -0.16 4336.3 5838.37 -31.7 0.73320 1.00000 53 Rv0045c - POSSIBLE HYDROLASE 7 278.0 309.7 0.16 5838.4 4336.29 31.7 0.72700 1.00000
53 Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 16 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 54 Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 16 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
54 Rv0047c - hypothetical protein Rv0047c 7 144.9 26.6 -2.44 2029.1 559.05 -118.3 0.07060 1.00000 55 Rv0047c - hypothetical protein Rv0047c 7 26.6 144.9 2.40 559.1 2029.07 118.3 0.09100 1.00000
55 Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 397.0 378.2 -0.07 12704.5 18153.75 -18.8 0.85380 1.00000 56 Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 378.2 397.0 0.07 18153.7 12704.49 18.8 0.86000 1.00000
56 Rv0049 - hypothetical protein Rv0049 8 99.5 237.3 1.25 1591.3 5694.83 137.8 0.22340 1.00000 57 Rv0049 - hypothetical protein Rv0049 8 237.3 99.5 -1.25 5694.8 1591.33 -137.8 0.22900 1.00000
57 Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 23.9 37.3 0.64 1770.3 4144.46 13.4 0.46210 1.00000 58 Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 37.3 23.9 -0.62 4144.5 1770.34 -13.4 0.45200 1.00000
58 Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 122.5 101.2 -0.28 8331.8 10327.07 -21.3 0.65320 1.00000 59 Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 101.2 122.5 0.27 10327.1 8331.83 21.3 0.65800 1.00000
59 Rv0052 - hypothetical protein Rv0052 7 250.7 180.4 -0.47 3510.2 3788.37 -70.3 0.36220 1.00000 60 Rv0052 - hypothetical protein Rv0052 7 180.4 250.7 0.47 3788.4 3510.24 70.3 0.35800 1.00000
60 Rv0053 rpsF 30S ribosomal protein S6 6 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 61 Rv0053 rpsF 30S ribosomal protein S6 6 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
61 Rv0054 ssb single-strand DNA-binding protein 5 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 62 Rv0054 ssb single-strand DNA-binding protein 5 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
62 Rv0055 rpsR 30S ribosomal protein S18 4 12.0 0.0 -3.70 95.7 0.00 -12.0 0.40400 1.00000 63 Rv0055 rpsR 30S ribosomal protein S18 4 0.0 12.0 3.70 0.0 95.68 12.0 0.38900 1.00000
63 Rv0056 rplI 50S ribosomal protein L9 7 37.4 13.8 -1.43 523.0 290.30 -23.5 0.26930 1.00000 64 Rv0056 rplI 50S ribosomal protein L9 7 13.8 37.4 1.37 290.3 522.96 23.5 0.24700 1.00000
64 Rv0057 - hypothetical protein Rv0057 15 73.0 108.1 0.57 2189.3 4865.78 35.2 0.45100 1.00000 65 Rv0057 - hypothetical protein Rv0057 15 108.1 73.0 -0.56 4865.8 2189.30 -35.2 0.44400 1.00000
65 Rv0058 dnaB replicative DNA helicase 39 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 66 Rv0058 dnaB replicative DNA helicase 39 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
66 Rv0059 - hypothetical protein Rv0059 20 264.5 242.1 -0.13 10581.1 14527.75 -22.4 0.75390 1.00000 67 Rv0059 - hypothetical protein Rv0059 20 242.1 264.5 0.13 14527.7 10581.11 22.4 0.77400 1.00000
67 Rv0060 - hypothetical protein Rv0060 23 13.1 11.0 -0.26 603.6 757.57 -2.1 0.94420 1.00000 68 Rv0060 - hypothetical protein Rv0060 23 11.0 13.1 0.24 757.6 603.64 2.1 0.94000 1.00000
68 Rv0061 - hypothetical protein Rv0061 6 124.5 174.1 0.48 1494.5 3133.54 49.5 0.56640 1.00000 69 Rv0061 - hypothetical protein Rv0061 6 174.1 124.5 -0.48 3133.5 1494.48 -49.5 0.55000 1.00000
69 Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 21 206.0 195.2 -0.08 8651.2 12294.90 -10.8 0.84180 1.00000 70 Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 21 195.2 206.0 0.08 12294.9 8651.18 10.8 0.84900 1.00000
70 Rv0063 - POSSIBLE OXIDOREDUCTASE 23 278.5 1108.1 1.99 12809.5 76460.41 829.7 0.33950 1.00000 71 Rv0063 - POSSIBLE OXIDOREDUCTASE 23 1108.1 278.5 -1.99 76460.4 12809.46 -829.7 0.34300 1.00000
71 Rv0064 - hypothetical protein Rv0064 68 80.9 94.7 0.23 10998.2 19327.28 13.9 0.52430 1.00000 72 Rv0064 - hypothetical protein Rv0064 68 94.7 80.9 -0.23 19327.3 10998.15 -13.9 0.55000 1.00000
72 Rv0065 - hypothetical protein Rv0065 8 93.7 171.3 0.87 1498.5 4111.50 77.7 0.51260 1.00000 73 Rv0065 - hypothetical protein Rv0065 8 171.3 93.7 -0.86 4111.5 1498.47 -77.7 0.54100 1.00000
73 Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 0.3 0.0 -0.36 21.3 0.00 -0.3 0.39790 1.00000 74 Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 0.0 0.3 0.36 0.0 21.26 0.3 0.40500 1.00000
74 Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 38.2 48.4 0.34 917.1 1743.24 10.2 0.78360 1.00000 75 Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 48.4 38.2 -0.33 1743.2 917.12 -10.2 0.76100 1.00000
75 Rv0068 - short chain dehydrogenase 12 153.3 277.6 0.86 3679.3 9993.78 124.3 0.45290 1.00000 76 Rv0068 - short chain dehydrogenase 12 277.6 153.3 -0.85 9993.8 3679.26 -124.3 0.43500 1.00000
76 Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 291.7 17205.5 5.88 7001.0 619398.51 16913.8 0.34710 1.00000 77 Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 17205.5 291.7 -5.88 619398.5 7001.04 -16913.8 0.33400 1.00000
77 Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 127.1 130.7 0.04 4575.9 7060.30 3.6 0.95000 1.00000 78 Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 130.7 127.1 -0.04 7060.3 4575.85 -3.6 0.94400 1.00000
78 Rv0071 - POSSIBLE MATURASE 8 489.0 620.1 0.34 7824.7 14883.37 131.1 0.68360 1.00000 79 Rv0071 - POSSIBLE MATURASE 8 620.1 489.0 -0.34 14883.4 7824.71 -131.1 0.71900 1.00000
79 Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 16 266.0 305.2 0.20 8510.7 14648.03 39.2 0.78400 1.00000 80 Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 16 305.2 266.0 -0.20 14648.0 8510.71 -39.2 0.81300 1.00000
80 Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 353.9 283.3 -0.32 10617.9 12750.65 -70.6 0.49580 1.00000 81 Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 283.3 353.9 0.32 12750.6 10617.86 70.6 0.48100 1.00000
81 Rv0074 - hypothetical protein Rv0074 19 84.6 100.2 0.24 3213.3 5708.72 15.6 0.63770 1.00000 82 Rv0074 - hypothetical protein Rv0074 19 100.2 84.6 -0.24 5708.7 3213.34 -15.6 0.65600 1.00000
82 Rv0075 - PROBABLE AMINOTRANSFERASE 24 217.5 269.9 0.31 10441.0 19432.63 52.4 0.41730 1.00000 83 Rv0075 - PROBABLE AMINOTRANSFERASE 24 269.9 217.5 -0.31 19432.6 10440.98 -52.4 0.42600 1.00000
83 Rv0076c - PROBABLE MEMBRANE PROTEIN 3 176.8 289.0 0.71 1060.8 2601.13 112.2 0.66220 1.00000 84 Rv0076c - PROBABLE MEMBRANE PROTEIN 3 289.0 176.8 -0.71 2601.1 1060.79 -112.2 0.65600 1.00000
84 Rv0077c - PROBABLE OXIDOREDUCTASE 14 185.8 152.0 -0.29 5203.7 6383.45 -33.9 0.59930 1.00000 85 Rv0077c - PROBABLE OXIDOREDUCTASE 14 152.0 185.8 0.29 6383.4 5203.69 33.9 0.57100 1.00000
85 Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 8 19.7 11.3 -0.80 315.4 271.63 -8.4 0.59070 1.00000 86 Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 8 11.3 19.7 0.75 271.6 315.41 8.4 0.60800 1.00000
86 Rv0078A - hypothetical protein Rv0078A 10 183.9 117.9 -0.64 3677.3 3537.63 -65.9 0.28830 1.00000 87 Rv0078A - hypothetical protein Rv0078A 10 117.9 183.9 0.64 3537.6 3677.34 65.9 0.30100 1.00000
87 Rv0079 - hypothetical protein Rv0079 14 376.2 408.8 0.12 10534.3 17171.12 32.6 0.84060 1.00000 88 Rv0079 - hypothetical protein Rv0079 14 408.8 376.2 -0.12 17171.1 10534.25 -32.6 0.85000 1.00000
88 Rv0080 - hypothetical protein Rv0080 4 454.5 600.3 0.40 3635.9 7203.03 145.8 0.75160 1.00000 89 Rv0080 - hypothetical protein Rv0080 4 600.3 454.5 -0.40 7203.0 3635.90 -145.8 0.77500 1.00000
89 Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 5 374.7 346.7 -0.11 3747.1 5200.16 -28.0 0.84060 1.00000 90 Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 5 346.7 374.7 0.11 5200.2 3747.15 28.0 0.83500 1.00000
90 Rv0082 - PROBABLE OXIDOREDUCTASE 7 180.7 159.4 -0.18 2530.2 3347.28 -21.3 0.79810 1.00000 91 Rv0082 - PROBABLE OXIDOREDUCTASE 7 159.4 180.7 0.18 3347.3 2530.16 21.3 0.81300 1.00000
91 Rv0083 - PROBABLE OXIDOREDUCTASE 23 202.6 144.4 -0.49 9320.3 9966.24 -58.2 0.19480 1.00000 92 Rv0083 - PROBABLE OXIDOREDUCTASE 23 144.4 202.6 0.49 9966.2 9320.28 58.2 0.20900 1.00000
92 Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 183.6 107.6 -0.77 3304.0 2905.84 -75.9 0.22580 1.00000 93 Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 107.6 183.6 0.76 2905.8 3303.99 75.9 0.23000 1.00000
93 Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 73.7 73.2 -0.01 589.7 877.93 -0.6 0.99610 1.00000 94 Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 73.2 73.7 0.01 877.9 589.71 0.6 0.99700 1.00000
94 Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 33.6 46.9 0.48 1007.7 2112.52 13.4 0.57200 1.00000 95 Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 46.9 33.6 -0.47 2112.5 1007.69 -13.4 0.55000 1.00000
95 Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 25 35.9 25.0 -0.53 1796.3 1871.83 -11.0 0.62360 1.00000 96 Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 25 25.0 35.9 0.51 1871.8 1796.31 11.0 0.65100 1.00000
96 Rv0088 - hypothetical protein Rv0088 14 33.9 54.7 0.69 949.0 2297.30 20.8 0.50670 1.00000 97 Rv0088 - hypothetical protein Rv0088 14 54.7 33.9 -0.67 2297.3 949.04 -20.8 0.49500 1.00000
97 Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 10 111.8 134.6 0.27 2235.3 4037.95 22.8 0.74620 1.00000 98 Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 10 134.6 111.8 -0.27 4037.9 2235.26 -22.8 0.74000 1.00000
98 Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 141.2 129.1 -0.13 3389.3 4648.10 -12.1 0.82580 1.00000 99 Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 129.1 141.2 0.13 4648.1 3389.28 12.1 0.83800 1.00000
99 Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 372.5 269.6 -0.47 8195.5 8897.25 -102.9 0.45060 1.00000 100 Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 269.6 372.5 0.46 8897.3 8195.54 102.9 0.46400 1.00000
100 Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 171.9 97.1 -0.82 10315.5 8736.65 -74.9 0.02900 1.00000 101 Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 97.1 171.9 0.82 8736.7 10315.46 74.9 0.02700 1.00000
101 Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 8 78.5 76.1 -0.05 1256.7 1825.51 -2.5 0.96640 1.00000 102 Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 8 76.1 78.5 0.05 1825.5 1256.71 2.5 0.96100 1.00000
102 Rv0094c - hypothetical protein Rv0094c 14 120.7 129.1 0.10 3379.2 5422.45 8.4 0.78210 1.00000 103 Rv0094c - hypothetical protein Rv0094c 14 129.1 120.7 -0.10 5422.5 3379.17 -8.4 0.77900 1.00000
103 Rv0095c - hypothetical protein Rv0095c 9 80.6 78.1 -0.05 1450.5 2107.86 -2.5 0.96600 1.00000 104 Rv0095c - hypothetical protein Rv0095c 9 78.1 80.6 0.05 2107.9 1450.54 2.5 0.97200 1.00000
104 Rv0096 PPE1 PPE FAMILY PROTEIN 34 185.2 203.8 0.14 12590.4 20782.86 18.6 0.78200 1.00000 105 Rv0096 PPE1 PPE FAMILY PROTEIN 34 203.8 185.2 -0.14 20782.9 12590.44 -18.6 0.77400 1.00000
105 Rv0097 - POSSIBLE OXIDOREDUCTASE 26 162.2 96.4 -0.75 8433.6 7517.52 -65.8 0.23270 1.00000 106 Rv0097 - POSSIBLE OXIDOREDUCTASE 26 96.4 162.2 0.74 7517.5 8433.61 65.8 0.20600 1.00000
106 Rv0098 - hypothetical protein Rv0098 11 40.3 80.2 0.99 886.4 2646.90 39.9 0.31780 1.00000 107 Rv0098 - hypothetical protein Rv0098 11 80.2 40.3 -0.98 2646.9 886.41 -39.9 0.31400 1.00000
107 Rv0099 fadD10 acyl-CoA synthetase 26 33.2 44.7 0.43 1727.1 3488.09 11.5 0.57190 1.00000 108 Rv0099 fadD10 acyl-CoA synthetase 26 44.7 33.2 -0.42 3488.1 1727.10 -11.5 0.58000 1.00000
108 Rv0100 - hypothetical protein Rv0100 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 109 Rv0100 - hypothetical protein Rv0100 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
109 Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 110 Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
110 Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 111 Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
111 Rv0103c ctpB PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 112 Rv0103c ctpB PROBABLE CATION-TRANSPORTER P-TYPE ATPASE B CTPB 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000
112 Rv0104 - hypothetical protein Rv0104 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 113 Rv0104 - hypothetical protein Rv0104 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000