Mercurial > repos > iuc > gff_to_prot
diff test-data/resampling-sites1.txt @ 7:661c164268cc draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/transit/ commit 0daaffac75df549583b6d834113608c2dbacb1d3
| author | iuc |
|---|---|
| date | Tue, 27 May 2025 20:00:00 +0000 |
| parents | c1751dfb4d94 |
| children |
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--- a/test-data/resampling-sites1.txt Tue Nov 30 10:59:17 2021 +0000 +++ b/test-data/resampling-sites1.txt Tue May 27 20:00:00 2025 +0000 @@ -1,110 +1,111 @@ #Resampling -#Console: python /Users/delphinel/miniconda3/envs/transit_test/bin/transit resampling transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig transit-in1_smol.prot resampling-sites1_smol.txt -#Control Data: b'transit-in1-rep2_smol.wig,transit-in1-rep1_smol.wig' -#Experimental Data: b'transit-co1-rep3_smol.wig,transit-co1-rep2_smol.wig,transit-co1-rep1_smol.wig' -#Annotation path: b'transit-in1_smol.prot' -#Time: 64.01395511627197 +#Console: python3 /usr/local/bin/transit resampling control_file_0.wig,control_file_1.wig,control_file_2.wig input_file_0.wig,input_file_1.wig annotation.dat transit_out.txt -iN 0.0 -iC 0.0 -n TTR -s 1000 +#Parameters: samples=1000, norm=TTR, histograms=False, adaptive=False, excludeZeros=False, pseudocounts=1.0, LOESS=False, trim_Nterm=0.0, trim_Cterm=0.0 +#Control Data: b'control_file_0.wig,control_file_1.wig,control_file_2.wig' +#Experimental Data: b'input_file_0.wig,input_file_1.wig' +#Annotation path: b'annotation.dat' +#Time: 9.306800127029419 #Orf Name Desc Sites Mean Ctrl Mean Exp log2FC Sum Ctrl Sum Exp Delta Mean p-value Adj. p-value Rv0001 dnaA chromosomal replication initiation protein 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 Rv0002 dnaN DNA polymerase III subunit beta 31 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0003 recF recombination protein F 35 22.6 27.7 0.30 1579.1 2907.67 5.1 0.66630 1.00000 -Rv0004 - hypothetical protein Rv0004 7 2.9 0.0 -1.97 40.8 0.00 -2.9 0.40810 1.00000 -Rv0005 gyrB DNA gyrase subunit B 42 11.3 3.6 -1.66 951.9 450.90 -7.8 0.40760 1.00000 -Rv0006 gyrA DNA gyrase subunit A 45 5.7 2.4 -1.22 511.8 330.34 -3.2 0.50960 1.00000 -Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 10 16.2 53.7 1.73 323.1 1610.25 37.5 0.47710 1.00000 -Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 235.5 195.4 -0.27 1884.3 2345.17 -40.1 0.74730 1.00000 -Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 175.3 89.0 -0.98 2453.5 1869.11 -86.2 0.24570 1.00000 -Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 179.3 172.9 -0.05 3586.6 5186.87 -6.4 0.94490 1.00000 +Rv0003 recF recombination protein F 35 27.7 22.6 -0.28 2907.7 1579.07 -5.1 0.66000 1.00000 +Rv0004 - hypothetical protein Rv0004 7 0.0 2.9 1.97 0.0 40.75 2.9 0.40100 1.00000 +Rv0005 gyrB DNA gyrase subunit B 42 3.6 11.3 1.43 450.9 951.88 7.8 0.40100 1.00000 +Rv0006 gyrA DNA gyrase subunit A 45 2.4 5.7 0.96 330.3 511.83 3.2 0.51200 1.00000 +Rv0007 - POSSIBLE CONSERVED MEMBRANE PROTEIN 10 53.7 16.2 -1.67 1610.3 323.06 -37.5 0.49200 1.00000 +Rv0008c - POSSIBLE MEMBRANE PROTEIN 4 195.4 235.5 0.27 2345.2 1884.31 40.1 0.73800 1.00000 +Rv0009 ppiA PROBABLE IRON-REGULATED PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A PPIA (PPIase A) (ROTAMASE A) 7 89.0 175.3 0.97 1869.1 2453.52 86.2 0.26100 1.00000 +Rv0010c - PROBABLE CONSERVED MEMBRANE PROTEIN 10 172.9 179.3 0.05 5186.9 3586.59 6.4 0.94600 1.00000 Rv0011c - putative septation inhibitor protein 3 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 247.6 104.1 -1.25 7922.3 4996.36 -143.5 0.02820 1.00000 -Rv0013 trpG para-aminobenzoate synthase component II 15 0.7 2.9 2.03 21.1 129.04 2.2 0.90500 1.00000 +Rv0012 - PROBABLE CONSERVED MEMBRANE PROTEIN 16 104.1 247.6 1.24 4996.4 7922.27 143.5 0.02800 1.00000 +Rv0013 trpG para-aminobenzoate synthase component II 15 2.9 0.7 -1.18 129.0 21.13 -2.2 0.90400 1.00000 Rv0014c pknB TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE B PKNB (PROTEIN KINASE B) (STPK B) 24 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 23.6 12.4 -0.92 753.9 596.59 -11.1 0.70820 1.00000 -Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 19.4 12.9 -0.58 1436.0 1436.86 -6.5 0.43400 1.00000 -Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 50.3 50.0 -0.01 2718.6 4051.86 -0.3 0.98690 1.00000 -Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 15.5 12.4 -0.32 777.2 933.35 -3.1 0.72310 1.00000 -Rv0019c - hypothetical protein Rv0019c 13 178.0 36.5 -2.29 4628.3 1421.57 -141.6 0.00390 1.00000 -Rv0020c TB39.8 hypothetical protein Rv0020c 52 12.7 17.5 0.47 1317.9 2736.79 4.9 0.63120 1.00000 -Rv0021c - hypothetical protein Rv0021c 22 301.9 542.8 0.85 13281.7 35827.15 241.0 0.24080 1.00000 -Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 421.8 527.6 0.32 6749.0 12661.35 105.7 0.74770 1.00000 +Rv0015c pknA TRANSMEMBRANE SERINE/THREONINE-PROTEIN KINASE A PKNA (PROTEIN KINASE A) (STPK A) 16 12.4 23.6 0.87 596.6 753.90 11.1 0.71200 1.00000 +Rv0016c pbpA PROBABLE PENICILLIN-BINDING PROTEIN PBPA 37 12.9 19.4 0.55 1436.9 1436.03 6.5 0.44600 1.00000 +Rv0017c rodA PROBABLE CELL DIVISION PROTEIN RODA 27 50.0 50.3 0.01 4051.9 2718.62 0.3 0.98600 1.00000 +Rv0018c ppp POSSIBLE SERINE/THREONINE PHOSPHATASE PPP 25 12.4 15.5 0.30 933.4 777.22 3.1 0.68900 1.00000 +Rv0019c - hypothetical protein Rv0019c 13 36.5 178.0 2.26 1421.6 4628.28 141.6 0.00300 1.00000 +Rv0020c TB39.8 hypothetical protein Rv0020c 52 17.5 12.7 -0.44 2736.8 1317.86 -4.9 0.64400 1.00000 +Rv0021c - hypothetical protein Rv0021c 22 542.8 301.9 -0.84 35827.1 13281.74 -241.0 0.23500 1.00000 +Rv0022c whiB5 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN WHIB-LIKE WHIB5 8 527.6 421.8 -0.32 12661.4 6749.00 -105.7 0.75900 1.00000 Rv0023 - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN 12 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 12 225.5 222.8 -0.02 5410.9 8019.31 -2.7 0.97750 1.00000 -Rv0025 - hypothetical protein Rv0025 7 90.1 275.8 1.61 1261.4 5790.99 185.7 0.03210 1.00000 -Rv0026 - hypothetical protein Rv0026 14 154.7 166.7 0.11 4332.5 7000.58 11.9 0.83090 1.00000 -Rv0027 - hypothetical protein Rv0027 5 42.4 9.2 -2.21 423.7 137.74 -33.2 0.17520 1.00000 -Rv0028 - hypothetical protein Rv0028 5 54.5 68.7 0.33 544.9 1030.50 14.2 0.79850 1.00000 -Rv0029 - hypothetical protein Rv0029 18 163.6 682.7 2.06 5889.3 36863.16 519.1 0.23780 1.00000 -Rv0030 - hypothetical protein Rv0030 5 24.8 13.7 -0.86 247.9 205.46 -11.1 0.62930 1.00000 +Rv0024 - PUTATIVE SECRETED PROTEIN P60-RELATED PROTEIN 12 222.8 225.5 0.02 8019.3 5410.92 2.7 0.98100 1.00000 +Rv0025 - hypothetical protein Rv0025 7 275.8 90.1 -1.60 5791.0 1261.40 -185.7 0.03000 1.00000 +Rv0026 - hypothetical protein Rv0026 14 166.7 154.7 -0.11 7000.6 4332.46 -11.9 0.85900 1.00000 +Rv0027 - hypothetical protein Rv0027 5 9.2 42.4 2.09 137.7 423.67 33.2 0.17300 1.00000 +Rv0028 - hypothetical protein Rv0028 5 68.7 54.5 -0.33 1030.5 544.86 -14.2 0.78600 1.00000 +Rv0029 - hypothetical protein Rv0029 18 682.7 163.6 -2.05 36863.2 5889.34 -519.1 0.22500 1.00000 +Rv0030 - hypothetical protein Rv0030 5 13.7 24.8 0.81 205.5 247.86 11.1 0.61900 1.00000 Rv0031 - POSSIBLE REMNANT OF A TRANSPOSASE 1 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 152.1 215.1 0.50 17336.4 36778.48 63.0 0.33450 1.00000 -Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 186.7 250.2 0.42 1120.3 2251.39 63.4 0.58260 1.00000 -Rv0034 - hypothetical protein Rv0034 5 189.1 283.3 0.58 1891.1 4250.17 94.2 0.46040 1.00000 -Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 250.4 251.4 0.01 12521.7 18851.74 0.9 0.98980 1.00000 -Rv0036c - hypothetical protein Rv0036c 4 733.0 435.1 -0.75 5864.4 5221.17 -298.0 0.30590 1.00000 -Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 20 176.5 306.5 0.80 7061.9 18388.59 129.9 0.35200 1.00000 -Rv0038 - hypothetical protein Rv0038 7 293.8 416.8 0.50 4112.5 8752.08 123.0 0.49790 1.00000 -Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 312.6 426.7 0.45 2500.4 5120.20 114.1 0.70430 1.00000 -Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 9 46.0 130.8 1.51 827.9 3531.56 84.8 0.16480 1.00000 +Rv0032 bioF2 POSSIBLE 8-AMINO-7-OXONONANOATE SYNTHASE BIOF2 (AONS) (8-AMINO-7-KETOPELARGONATE SYNTHASE) (7-KETO-8-AMINO-PELARGONIC ACID SYNTHETASE) (7-KAP SYNTHETASE) (L-ALANINE--PIMELYL CoA LIGASE) 57 215.1 152.1 -0.50 36778.5 17336.39 -63.0 0.33100 1.00000 +Rv0033 acpA PROBABLE ACYL CARRIER PROTEIN ACPA (ACP) 3 250.2 186.7 -0.42 2251.4 1120.32 -63.4 0.60000 1.00000 +Rv0034 - hypothetical protein Rv0034 5 283.3 189.1 -0.58 4250.2 1891.15 -94.2 0.47600 1.00000 +Rv0035 fadD34 PROBABLE FATTY-ACID-CoA LIGASE FADD34 (FATTY-ACID-CoA SYNTHETASE) (FATTY-ACID-CoA SYNTHASE) 25 251.4 250.4 -0.01 18851.7 12521.72 -0.9 0.99400 1.00000 +Rv0036c - hypothetical protein Rv0036c 4 435.1 733.0 0.75 5221.2 5864.39 298.0 0.33800 1.00000 +Rv0037c - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 20 306.5 176.5 -0.79 18388.6 7061.90 -129.9 0.34700 1.00000 +Rv0038 - hypothetical protein Rv0038 7 416.8 293.8 -0.50 8752.1 4112.51 -123.0 0.49500 1.00000 +Rv0039c - POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN 4 426.7 312.6 -0.45 5120.2 2500.44 -114.1 0.72800 1.00000 +Rv0040c mtc28 SECRETED PROLINE RICH PROTEIN MTC28 (PROLINE RICH 28 KDA ANTIGEN) 9 130.8 46.0 -1.49 3531.6 827.95 -84.8 0.16900 1.00000 Rv0041 leuS leucyl-tRNA synthetase 72 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 60.3 41.7 -0.53 603.0 625.40 -18.6 0.62690 1.00000 -Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 10 98.3 68.3 -0.52 1966.2 2050.19 -30.0 0.45820 1.00000 -Rv0044c - POSSIBLE OXIDOREDUCTASE 20 234.2 187.4 -0.32 9368.1 11246.32 -46.8 0.54380 1.00000 -Rv0045c - POSSIBLE HYDROLASE 7 309.7 278.0 -0.16 4336.3 5838.37 -31.7 0.73320 1.00000 +Rv0042c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY MARR-FAMILY) 5 41.7 60.3 0.52 625.4 603.01 18.6 0.64900 1.00000 +Rv0043c - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY GNTR-FAMILY) 10 68.3 98.3 0.52 2050.2 1966.16 30.0 0.47300 1.00000 +Rv0044c - POSSIBLE OXIDOREDUCTASE 20 187.4 234.2 0.32 11246.3 9368.12 46.8 0.52900 1.00000 +Rv0045c - POSSIBLE HYDROLASE 7 278.0 309.7 0.16 5838.4 4336.29 31.7 0.72700 1.00000 Rv0046c ino1 MYO-INOSITOL-1-PHOSPHATE SYNTHASE INO1 (Inositol 1-phosphate synthetase) (D-glucose 6-phosphate cycloaldolase) (Glucose 6-phosphate cyclase) (Glucocycloaldolase) 16 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0047c - hypothetical protein Rv0047c 7 144.9 26.6 -2.44 2029.1 559.05 -118.3 0.07060 1.00000 -Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 397.0 378.2 -0.07 12704.5 18153.75 -18.8 0.85380 1.00000 -Rv0049 - hypothetical protein Rv0049 8 99.5 237.3 1.25 1591.3 5694.83 137.8 0.22340 1.00000 -Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 23.9 37.3 0.64 1770.3 4144.46 13.4 0.46210 1.00000 -Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 122.5 101.2 -0.28 8331.8 10327.07 -21.3 0.65320 1.00000 -Rv0052 - hypothetical protein Rv0052 7 250.7 180.4 -0.47 3510.2 3788.37 -70.3 0.36220 1.00000 +Rv0047c - hypothetical protein Rv0047c 7 26.6 144.9 2.40 559.1 2029.07 118.3 0.09100 1.00000 +Rv0048c - POSSIBLE MEMBRANE PROTEIN 16 378.2 397.0 0.07 18153.7 12704.49 18.8 0.86000 1.00000 +Rv0049 - hypothetical protein Rv0049 8 237.3 99.5 -1.25 5694.8 1591.33 -137.8 0.22900 1.00000 +Rv0050 ponA1 PROBABLE BIFUNCTIONAL PENICILLIN-BINDING PROTEIN 1A/1B PONA1 (MUREIN POLYMERASE) (PBP1): PENICILLIN-INSENSITIVE TRANSGLYCOSYLASE (PEPTIDOGLYCAN TGASE) + PENICILLIN-SENSITIVE TRANSPEPTIDASE (DD-TRANSPEPTIDASE) 37 37.3 23.9 -0.62 4144.5 1770.34 -13.4 0.45200 1.00000 +Rv0051 - PROBABLE CONSERVED TRANSMEMBRANE PROTEIN 34 101.2 122.5 0.27 10327.1 8331.83 21.3 0.65800 1.00000 +Rv0052 - hypothetical protein Rv0052 7 180.4 250.7 0.47 3788.4 3510.24 70.3 0.35800 1.00000 Rv0053 rpsF 30S ribosomal protein S6 6 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 Rv0054 ssb single-strand DNA-binding protein 5 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0055 rpsR 30S ribosomal protein S18 4 12.0 0.0 -3.70 95.7 0.00 -12.0 0.40400 1.00000 -Rv0056 rplI 50S ribosomal protein L9 7 37.4 13.8 -1.43 523.0 290.30 -23.5 0.26930 1.00000 -Rv0057 - hypothetical protein Rv0057 15 73.0 108.1 0.57 2189.3 4865.78 35.2 0.45100 1.00000 +Rv0055 rpsR 30S ribosomal protein S18 4 0.0 12.0 3.70 0.0 95.68 12.0 0.38900 1.00000 +Rv0056 rplI 50S ribosomal protein L9 7 13.8 37.4 1.37 290.3 522.96 23.5 0.24700 1.00000 +Rv0057 - hypothetical protein Rv0057 15 108.1 73.0 -0.56 4865.8 2189.30 -35.2 0.44400 1.00000 Rv0058 dnaB replicative DNA helicase 39 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 -Rv0059 - hypothetical protein Rv0059 20 264.5 242.1 -0.13 10581.1 14527.75 -22.4 0.75390 1.00000 -Rv0060 - hypothetical protein Rv0060 23 13.1 11.0 -0.26 603.6 757.57 -2.1 0.94420 1.00000 -Rv0061 - hypothetical protein Rv0061 6 124.5 174.1 0.48 1494.5 3133.54 49.5 0.56640 1.00000 -Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 21 206.0 195.2 -0.08 8651.2 12294.90 -10.8 0.84180 1.00000 -Rv0063 - POSSIBLE OXIDOREDUCTASE 23 278.5 1108.1 1.99 12809.5 76460.41 829.7 0.33950 1.00000 -Rv0064 - hypothetical protein Rv0064 68 80.9 94.7 0.23 10998.2 19327.28 13.9 0.52430 1.00000 -Rv0065 - hypothetical protein Rv0065 8 93.7 171.3 0.87 1498.5 4111.50 77.7 0.51260 1.00000 -Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 0.3 0.0 -0.36 21.3 0.00 -0.3 0.39790 1.00000 -Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 38.2 48.4 0.34 917.1 1743.24 10.2 0.78360 1.00000 -Rv0068 - short chain dehydrogenase 12 153.3 277.6 0.86 3679.3 9993.78 124.3 0.45290 1.00000 -Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 291.7 17205.5 5.88 7001.0 619398.51 16913.8 0.34710 1.00000 -Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 127.1 130.7 0.04 4575.9 7060.30 3.6 0.95000 1.00000 -Rv0071 - POSSIBLE MATURASE 8 489.0 620.1 0.34 7824.7 14883.37 131.1 0.68360 1.00000 -Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 16 266.0 305.2 0.20 8510.7 14648.03 39.2 0.78400 1.00000 -Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 353.9 283.3 -0.32 10617.9 12750.65 -70.6 0.49580 1.00000 -Rv0074 - hypothetical protein Rv0074 19 84.6 100.2 0.24 3213.3 5708.72 15.6 0.63770 1.00000 -Rv0075 - PROBABLE AMINOTRANSFERASE 24 217.5 269.9 0.31 10441.0 19432.63 52.4 0.41730 1.00000 -Rv0076c - PROBABLE MEMBRANE PROTEIN 3 176.8 289.0 0.71 1060.8 2601.13 112.2 0.66220 1.00000 -Rv0077c - PROBABLE OXIDOREDUCTASE 14 185.8 152.0 -0.29 5203.7 6383.45 -33.9 0.59930 1.00000 -Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 8 19.7 11.3 -0.80 315.4 271.63 -8.4 0.59070 1.00000 -Rv0078A - hypothetical protein Rv0078A 10 183.9 117.9 -0.64 3677.3 3537.63 -65.9 0.28830 1.00000 -Rv0079 - hypothetical protein Rv0079 14 376.2 408.8 0.12 10534.3 17171.12 32.6 0.84060 1.00000 -Rv0080 - hypothetical protein Rv0080 4 454.5 600.3 0.40 3635.9 7203.03 145.8 0.75160 1.00000 -Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 5 374.7 346.7 -0.11 3747.1 5200.16 -28.0 0.84060 1.00000 -Rv0082 - PROBABLE OXIDOREDUCTASE 7 180.7 159.4 -0.18 2530.2 3347.28 -21.3 0.79810 1.00000 -Rv0083 - PROBABLE OXIDOREDUCTASE 23 202.6 144.4 -0.49 9320.3 9966.24 -58.2 0.19480 1.00000 -Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 183.6 107.6 -0.77 3304.0 2905.84 -75.9 0.22580 1.00000 -Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 73.7 73.2 -0.01 589.7 877.93 -0.6 0.99610 1.00000 -Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 33.6 46.9 0.48 1007.7 2112.52 13.4 0.57200 1.00000 -Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 25 35.9 25.0 -0.53 1796.3 1871.83 -11.0 0.62360 1.00000 -Rv0088 - hypothetical protein Rv0088 14 33.9 54.7 0.69 949.0 2297.30 20.8 0.50670 1.00000 -Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 10 111.8 134.6 0.27 2235.3 4037.95 22.8 0.74620 1.00000 -Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 141.2 129.1 -0.13 3389.3 4648.10 -12.1 0.82580 1.00000 -Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 372.5 269.6 -0.47 8195.5 8897.25 -102.9 0.45060 1.00000 -Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 171.9 97.1 -0.82 10315.5 8736.65 -74.9 0.02900 1.00000 -Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 8 78.5 76.1 -0.05 1256.7 1825.51 -2.5 0.96640 1.00000 -Rv0094c - hypothetical protein Rv0094c 14 120.7 129.1 0.10 3379.2 5422.45 8.4 0.78210 1.00000 -Rv0095c - hypothetical protein Rv0095c 9 80.6 78.1 -0.05 1450.5 2107.86 -2.5 0.96600 1.00000 -Rv0096 PPE1 PPE FAMILY PROTEIN 34 185.2 203.8 0.14 12590.4 20782.86 18.6 0.78200 1.00000 -Rv0097 - POSSIBLE OXIDOREDUCTASE 26 162.2 96.4 -0.75 8433.6 7517.52 -65.8 0.23270 1.00000 -Rv0098 - hypothetical protein Rv0098 11 40.3 80.2 0.99 886.4 2646.90 39.9 0.31780 1.00000 -Rv0099 fadD10 acyl-CoA synthetase 26 33.2 44.7 0.43 1727.1 3488.09 11.5 0.57190 1.00000 +Rv0059 - hypothetical protein Rv0059 20 242.1 264.5 0.13 14527.7 10581.11 22.4 0.77400 1.00000 +Rv0060 - hypothetical protein Rv0060 23 11.0 13.1 0.24 757.6 603.64 2.1 0.94000 1.00000 +Rv0061 - hypothetical protein Rv0061 6 174.1 124.5 -0.48 3133.5 1494.48 -49.5 0.55000 1.00000 +Rv0062 celA1 POSSIBLE CELLULASE CELA1 (ENDOGLUCANASE) (ENDO-1,4-BETA-GLUCANASE) (FI-CMCASE) (CARBOXYMETHYL CELLULASE) 21 195.2 206.0 0.08 12294.9 8651.18 10.8 0.84900 1.00000 +Rv0063 - POSSIBLE OXIDOREDUCTASE 23 1108.1 278.5 -1.99 76460.4 12809.46 -829.7 0.34300 1.00000 +Rv0064 - hypothetical protein Rv0064 68 94.7 80.9 -0.23 19327.3 10998.15 -13.9 0.55000 1.00000 +Rv0065 - hypothetical protein Rv0065 8 171.3 93.7 -0.86 4111.5 1498.47 -77.7 0.54100 1.00000 +Rv0066c icd2 PROBABLE ISOCITRATE DEHYDROGENASE 38 0.0 0.3 0.36 0.0 21.26 0.3 0.40500 1.00000 +Rv0067c - POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY TETR-FAMILY) 12 48.4 38.2 -0.33 1743.2 917.12 -10.2 0.76100 1.00000 +Rv0068 - short chain dehydrogenase 12 277.6 153.3 -0.85 9993.8 3679.26 -124.3 0.43500 1.00000 +Rv0069c sdaA PROBABLE L-SERINE DEHYDRATASE SDAA (L-SERINE DEAMINASE) (SDH) (L-SD) 12 17205.5 291.7 -5.88 619398.5 7001.04 -16913.8 0.33400 1.00000 +Rv0070c glyA2 PROBABLE SERINE HYDROXYMETHYLTRANSFERASE GLYA2 (SERINE METHYLASE 2) (SHMT 2) 18 130.7 127.1 -0.04 7060.3 4575.85 -3.6 0.94400 1.00000 +Rv0071 - POSSIBLE MATURASE 8 620.1 489.0 -0.34 14883.4 7824.71 -131.1 0.71900 1.00000 +Rv0072 - PROBABLE GLUTAMINE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER 16 305.2 266.0 -0.20 14648.0 8510.71 -39.2 0.81300 1.00000 +Rv0073 - PROBABLE GLUTAMINE-TRANSPORT ATP-BINDING PROTEIN ABC TRANSPORTER 15 283.3 353.9 0.32 12750.6 10617.86 70.6 0.48100 1.00000 +Rv0074 - hypothetical protein Rv0074 19 100.2 84.6 -0.24 5708.7 3213.34 -15.6 0.65600 1.00000 +Rv0075 - PROBABLE AMINOTRANSFERASE 24 269.9 217.5 -0.31 19432.6 10440.98 -52.4 0.42600 1.00000 +Rv0076c - PROBABLE MEMBRANE PROTEIN 3 289.0 176.8 -0.71 2601.1 1060.79 -112.2 0.65600 1.00000 +Rv0077c - PROBABLE OXIDOREDUCTASE 14 152.0 185.8 0.29 6383.4 5203.69 33.9 0.57100 1.00000 +Rv0078 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 8 11.3 19.7 0.75 271.6 315.41 8.4 0.60800 1.00000 +Rv0078A - hypothetical protein Rv0078A 10 117.9 183.9 0.64 3537.6 3677.34 65.9 0.30100 1.00000 +Rv0079 - hypothetical protein Rv0079 14 408.8 376.2 -0.12 17171.1 10534.25 -32.6 0.85000 1.00000 +Rv0080 - hypothetical protein Rv0080 4 600.3 454.5 -0.40 7203.0 3635.90 -145.8 0.77500 1.00000 +Rv0081 - PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN 5 346.7 374.7 0.11 5200.2 3747.15 28.0 0.83500 1.00000 +Rv0082 - PROBABLE OXIDOREDUCTASE 7 159.4 180.7 0.18 3347.3 2530.16 21.3 0.81300 1.00000 +Rv0083 - PROBABLE OXIDOREDUCTASE 23 144.4 202.6 0.49 9966.2 9320.28 58.2 0.20900 1.00000 +Rv0084 hycD POSSIBLE FORMATE HYDROGENLYASE HYCD (FHL) 9 107.6 183.6 0.76 2905.8 3303.99 75.9 0.23000 1.00000 +Rv0085 hycP POSSIBLE HYDROGENASE HYCP 4 73.2 73.7 0.01 877.9 589.71 0.6 0.99700 1.00000 +Rv0086 hycQ POSSIBLE HYDROGENASE HYCQ 15 46.9 33.6 -0.47 2112.5 1007.69 -13.4 0.55000 1.00000 +Rv0087 hycE POSSIBLE FORMATE HYDROGENASE HYCE (FHL) 25 25.0 35.9 0.51 1871.8 1796.31 11.0 0.65100 1.00000 +Rv0088 - hypothetical protein Rv0088 14 54.7 33.9 -0.67 2297.3 949.04 -20.8 0.49500 1.00000 +Rv0089 - POSSIBLE METHYLTRANSFERASE/METHYLASE 10 134.6 111.8 -0.27 4037.9 2235.26 -22.8 0.74000 1.00000 +Rv0090 - POSSIBLE MEMBRANE PROTEIN 12 129.1 141.2 0.13 4648.1 3389.28 12.1 0.83800 1.00000 +Rv0091 mtn PROBABLE BIFUNCTIONAL MTA/SAH NUCLEOSIDASE MTN: 5'-METHYLTHIOADENOSINE NUCLEOSIDASE (METHYLTHIOADENOSINE METHYLTHIORIBOHYDROLASE) + S-ADENOSYLHOMOCYSTEINE NUCLEOSIDASE (S-ADENOSYL-L-HOMOCYSTEINE HOMOCYSTEINYLRIBOHYDROLASE) 11 269.6 372.5 0.46 8897.3 8195.54 102.9 0.46400 1.00000 +Rv0092 ctpA PROBABLE CATION TRANSPORTER P-TYPE ATPASE A CTPA 30 97.1 171.9 0.82 8736.7 10315.46 74.9 0.02700 1.00000 +Rv0093c - PROBABLE CONSERVED MEMBRANE PROTEIN 8 76.1 78.5 0.05 1825.5 1256.71 2.5 0.96100 1.00000 +Rv0094c - hypothetical protein Rv0094c 14 129.1 120.7 -0.10 5422.5 3379.17 -8.4 0.77900 1.00000 +Rv0095c - hypothetical protein Rv0095c 9 78.1 80.6 0.05 2107.9 1450.54 2.5 0.97200 1.00000 +Rv0096 PPE1 PPE FAMILY PROTEIN 34 203.8 185.2 -0.14 20782.9 12590.44 -18.6 0.77400 1.00000 +Rv0097 - POSSIBLE OXIDOREDUCTASE 26 96.4 162.2 0.74 7517.5 8433.61 65.8 0.20600 1.00000 +Rv0098 - hypothetical protein Rv0098 11 80.2 40.3 -0.98 2646.9 886.41 -39.9 0.31400 1.00000 +Rv0099 fadD10 acyl-CoA synthetase 26 44.7 33.2 -0.42 3488.1 1727.10 -11.5 0.58000 1.00000 Rv0100 - hypothetical protein Rv0100 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 Rv0101 nrp PROBABLE PEPTIDE SYNTHETASE NRP (PEPTIDE SYNTHASE) 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000 Rv0102 - PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN 0 0.0 0.0 0.00 0.0 0.00 0.0 1.00000 1.00000