Mercurial > repos > iuc > gffcompare
comparison test-data/gffcompare_out1.stats @ 0:3c97c841a443 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
| author | iuc |
|---|---|
| date | Fri, 07 Apr 2017 16:02:07 -0400 |
| parents | |
| children | f99d7825a501 |
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| -1:000000000000 | 0:3c97c841a443 |
|---|---|
| 1 # gffcompare v0.9.8 | Command line was: | |
| 2 #gffcompare -r /tmp/tmp9HJ0Pt/files/000/dataset_364.dat -R -e 100 -d 100 /tmp/tmp9HJ0Pt/files/000/dataset_362.dat /tmp/tmp9HJ0Pt/files/000/dataset_363.dat | |
| 3 # | |
| 4 | |
| 5 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_362.dat | |
| 6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) | |
| 7 # (0 multi-transcript loci, ~1.0 transcripts per locus) | |
| 8 # Reference mRNAs : 1 in 1 loci (1 multi-exon) | |
| 9 # Super-loci w/ reference transcripts: 1 | |
| 10 #-----------------| Sensitivity | Precision | | |
| 11 Base level: 2.2 | 2.3 | | |
| 12 Exon level: 0.0 | 0.0 | | |
| 13 Intron level: 0.0 | -nan | | |
| 14 Intron chain level: 0.0 | -nan | | |
| 15 Transcript level: 0.0 | 0.0 | | |
| 16 Locus level: 0.0 | 0.0 | | |
| 17 | |
| 18 Matching intron chains: 0 | |
| 19 Matching transcripts: 0 | |
| 20 Matching loci: 0 | |
| 21 | |
| 22 Missed exons: 2/3 ( 66.7%) | |
| 23 Novel exons: 49/50 ( 98.0%) | |
| 24 Missed introns: 2/2 (100.0%) | |
| 25 Missed loci: 0/1 ( 0.0%) | |
| 26 Novel loci: 49/50 ( 98.0%) | |
| 27 | |
| 28 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_363.dat | |
| 29 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) | |
| 30 # (0 multi-transcript loci, ~1.0 transcripts per locus) | |
| 31 # Reference mRNAs : 0 in 0 loci (0 multi-exon) | |
| 32 | |
| 33 Total union super-loci across all input datasets: 87 | |
| 34 (0 multi-transcript, ~1.1 transcripts per locus) |