Mercurial > repos > iuc > gffcompare
comparison test-data/gffcompare_out2.stats @ 0:3c97c841a443 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/gffcompare commit 33ef7ef2f829bf46a6fde7637715d974c17f898a
| author | iuc |
|---|---|
| date | Fri, 07 Apr 2017 16:02:07 -0400 |
| parents | |
| children | f99d7825a501 |
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| -1:000000000000 | 0:3c97c841a443 |
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| 1 # gffcompare v0.9.8 | Command line was: | |
| 2 #gffcompare -r /tmp/tmp6wAQh6/files/000/dataset_668.dat -R -e 100 -d 100 /tmp/tmp6wAQh6/files/000/dataset_667.dat | |
| 3 # | |
| 4 | |
| 5 #= Summary for dataset: /tmp/tmp6wAQh6/files/000/dataset_667.dat | |
| 6 # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) | |
| 7 # (3 multi-transcript loci, ~1.2 transcripts per locus) | |
| 8 # Reference mRNAs : 20 in 7 loci (19 multi-exon) | |
| 9 # Super-loci w/ reference transcripts: 6 | |
| 10 #-----------------| Sensitivity | Precision | | |
| 11 Base level: 74.7 | 60.7 | | |
| 12 Exon level: 80.0 | 55.7 | | |
| 13 Intron level: 81.2 | 64.4 | | |
| 14 Intron chain level: 10.5 | 13.3 | | |
| 15 Transcript level: 10.0 | 5.7 | | |
| 16 Locus level: 28.6 | 6.9 | | |
| 17 | |
| 18 Matching intron chains: 2 | |
| 19 Matching transcripts: 2 | |
| 20 Matching loci: 2 | |
| 21 | |
| 22 Missed exons: 3/85 ( 3.5%) | |
| 23 Novel exons: 46/122 ( 37.7%) | |
| 24 Missed introns: 11/69 ( 15.9%) | |
| 25 Novel introns: 28/87 ( 32.2%) | |
| 26 Missed loci: 0/7 ( 0.0%) | |
| 27 Novel loci: 15/29 ( 51.7%) | |
| 28 | |
| 29 Total union super-loci across all input datasets: 21 |