Mercurial > repos > iuc > gffcompare

comparison test-data/gffcompare_out1.stats @ 2:f99d7825a501 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
author iuc
date Tue, 05 Feb 2019 15:51:44 -0500
parents 3c97c841a443
children 2bb86e2c417f
comparison
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1:c80cdc2eac6d 2:f99d7825a501
1 # gffcompare v0.9.8 | Command line was: 1 # gffcompare v0.10.6 | Command line was:
2 #gffcompare -r /tmp/tmp9HJ0Pt/files/000/dataset_364.dat -R -e 100 -d 100 /tmp/tmp9HJ0Pt/files/000/dataset_362.dat /tmp/tmp9HJ0Pt/files/000/dataset_363.dat 2 #gffcompare -r /tmp/tmp7AvPf0/files/000/dataset_3.dat -R -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf
3 # 3 #
4 4
5 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_362.dat 5 #= Summary for dataset: gffcompare_in1_gtf
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus) 7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon) 8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Super-loci w/ reference transcripts: 1 9 # Super-loci w/ reference transcripts: 1
10 #-----------------| Sensitivity | Precision | 10 #-----------------| Sensitivity | Precision |
23 Novel exons: 49/50 ( 98.0%) 23 Novel exons: 49/50 ( 98.0%)
24 Missed introns: 2/2 (100.0%) 24 Missed introns: 2/2 (100.0%)
25 Missed loci: 0/1 ( 0.0%) 25 Missed loci: 0/1 ( 0.0%)
26 Novel loci: 49/50 ( 98.0%) 26 Novel loci: 49/50 ( 98.0%)
27 27
28 #= Summary for dataset: /tmp/tmp9HJ0Pt/files/000/dataset_363.dat 28 #= Summary for dataset: gffcompare_in2_gtf
29 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) 29 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
30 # (0 multi-transcript loci, ~1.0 transcripts per locus) 30 # (0 multi-transcript loci, ~1.0 transcripts per locus)
31 # Reference mRNAs : 0 in 0 loci (0 multi-exon) 31 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
32 32
33 Total union super-loci across all input datasets: 87 33 Total union super-loci across all input datasets: 87
34 (0 multi-transcript, ~1.1 transcripts per locus) 34 (0 multi-transcript, ~1.1 transcripts per locus)
35 100 out of 100 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)