Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out1.gtf @ 2:f99d7825a501 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit a5352fb7f073b0083b750c5cf7d283ebcc16b30d
| author | iuc |
|---|---|
| date | Tue, 05 Feb 2019 15:51:44 -0500 |
| parents | 3c97c841a443 |
| children | 2bb86e2c417f |
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--- a/test-data/gffcompare_out1.gtf Wed Dec 12 03:19:14 2018 -0500 +++ b/test-data/gffcompare_out1.gtf Tue Feb 05 15:51:44 2019 -0500 @@ -58,132 +58,136 @@ chr1 Cufflinks exon 3197426 3197452 . . . transcript_id "TCONS_00000060"; gene_id "XLOC_000024"; exon_number "1"; chr1 Cufflinks transcript 3200023 3200191 . . . transcript_id "TCONS_00000020"; gene_id "XLOC_000025"; oId "CUFF.7.1"; class_code "u"; tss_id "TSS28"; chr1 Cufflinks exon 3200023 3200191 . . . transcript_id "TCONS_00000020"; gene_id "XLOC_000025"; exon_number "1"; +chr1 Cufflinks transcript 3200057 3200144 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000025"; oId "CUFF.23.1"; contained_in "TCONS_00000020"; class_code "u"; tss_id "TSS28"; +chr1 Cufflinks exon 3200057 3200144 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000025"; exon_number "1"; chr1 Cufflinks transcript 3200326 3200352 . . . transcript_id "TCONS_00000021"; gene_id "XLOC_000026"; oId "CUFF.5.1"; class_code "u"; tss_id "TSS29"; chr1 Cufflinks exon 3200326 3200352 . . . transcript_id "TCONS_00000021"; gene_id "XLOC_000026"; exon_number "1"; -chr1 Cufflinks transcript 3200431 3200457 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000027"; oId "CUFF.21.1"; class_code "u"; tss_id "TSS30"; -chr1 Cufflinks exon 3200431 3200457 . . . transcript_id "TCONS_00000061"; gene_id "XLOC_000027"; exon_number "1"; -chr1 Cufflinks transcript 3201008 3201039 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000028"; oId "CUFF.26.1"; class_code "u"; tss_id "TSS31"; -chr1 Cufflinks exon 3201008 3201039 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000028"; exon_number "1"; +chr1 Cufflinks transcript 3200431 3200457 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000027"; oId "CUFF.21.1"; class_code "u"; tss_id "TSS30"; +chr1 Cufflinks exon 3200431 3200457 . . . transcript_id "TCONS_00000062"; gene_id "XLOC_000027"; exon_number "1"; +chr1 Cufflinks transcript 3201008 3201039 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000028"; oId "CUFF.26.1"; class_code "u"; tss_id "TSS31"; +chr1 Cufflinks exon 3201008 3201039 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000028"; exon_number "1"; chr1 Cufflinks transcript 3201078 3201481 . . . transcript_id "TCONS_00000022"; gene_id "XLOC_000029"; oId "CUFF.9.1"; class_code "u"; tss_id "TSS32"; chr1 Cufflinks exon 3201078 3201481 . . . transcript_id "TCONS_00000022"; gene_id "XLOC_000029"; exon_number "1"; -chr1 Cufflinks transcript 3201597 3201666 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000030"; oId "CUFF.29.1"; class_code "u"; tss_id "TSS33"; -chr1 Cufflinks exon 3201597 3201666 . . . transcript_id "TCONS_00000063"; gene_id "XLOC_000030"; exon_number "1"; +chr1 Cufflinks transcript 3201161 3201187 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000029"; oId "CUFF.25.1"; contained_in "TCONS_00000022"; class_code "u"; tss_id "TSS32"; +chr1 Cufflinks exon 3201161 3201187 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000029"; exon_number "1"; +chr1 Cufflinks transcript 3201597 3201666 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000030"; oId "CUFF.29.1"; class_code "u"; tss_id "TSS33"; +chr1 Cufflinks exon 3201597 3201666 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000030"; exon_number "1"; chr1 Cufflinks transcript 3201673 3201699 . . . transcript_id "TCONS_00000023"; gene_id "XLOC_000031"; oId "CUFF.11.1"; class_code "u"; tss_id "TSS34"; chr1 Cufflinks exon 3201673 3201699 . . . transcript_id "TCONS_00000023"; gene_id "XLOC_000031"; exon_number "1"; -chr1 Cufflinks transcript 3201726 3201809 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000032"; oId "CUFF.31.1"; class_code "u"; tss_id "TSS35"; -chr1 Cufflinks exon 3201726 3201809 . . . transcript_id "TCONS_00000064"; gene_id "XLOC_000032"; exon_number "1"; -chr1 Cufflinks transcript 3211522 3211561 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000033"; gene_name "Xkr4"; oId "CUFF.33.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS36"; -chr1 Cufflinks exon 3211522 3211561 . . . transcript_id "TCONS_00000065"; gene_id "XLOC_000033"; exon_number "1"; +chr1 Cufflinks transcript 3201726 3201809 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000032"; oId "CUFF.31.1"; class_code "u"; tss_id "TSS35"; +chr1 Cufflinks exon 3201726 3201809 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000032"; exon_number "1"; +chr1 Cufflinks transcript 3211522 3211561 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000033"; gene_name "Xkr4"; oId "CUFF.33.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS36"; +chr1 Cufflinks exon 3211522 3211561 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000033"; exon_number "1"; chr1 Cufflinks transcript 3212214 3212292 . . . transcript_id "TCONS_00000024"; gene_id "XLOC_000034"; gene_name "Xkr4"; oId "CUFF.15.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS37"; chr1 Cufflinks exon 3212214 3212292 . . . transcript_id "TCONS_00000024"; gene_id "XLOC_000034"; exon_number "1"; chr1 Cufflinks transcript 3212368 3212439 . . . transcript_id "TCONS_00000025"; gene_id "XLOC_000035"; gene_name "Xkr4"; oId "CUFF.19.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS38"; chr1 Cufflinks exon 3212368 3212439 . . . transcript_id "TCONS_00000025"; gene_id "XLOC_000035"; exon_number "1"; -chr1 Cufflinks transcript 3212718 3212801 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000036"; gene_name "Xkr4"; oId "CUFF.35.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS39"; -chr1 Cufflinks exon 3212718 3212801 . . . transcript_id "TCONS_00000066"; gene_id "XLOC_000036"; exon_number "1"; +chr1 Cufflinks transcript 3212718 3212801 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000036"; gene_name "Xkr4"; oId "CUFF.35.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS39"; +chr1 Cufflinks exon 3212718 3212801 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000036"; exon_number "1"; chr1 Cufflinks transcript 3213096 3213192 . . . transcript_id "TCONS_00000026"; gene_id "XLOC_000037"; gene_name "Xkr4"; oId "CUFF.17.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS40"; chr1 Cufflinks exon 3213096 3213192 . . . transcript_id "TCONS_00000026"; gene_id "XLOC_000037"; exon_number "1"; -chr1 Cufflinks transcript 3213119 3213242 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000037"; gene_name "Xkr4"; oId "CUFF.37.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS40"; -chr1 Cufflinks exon 3213119 3213242 . . . transcript_id "TCONS_00000067"; gene_id "XLOC_000037"; exon_number "1"; -chr1 Cufflinks transcript 3240607 3240633 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000038"; gene_name "Xkr4"; oId "CUFF.39.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS41"; -chr1 Cufflinks exon 3240607 3240633 . . . transcript_id "TCONS_00000068"; gene_id "XLOC_000038"; exon_number "1"; -chr1 Cufflinks transcript 3242480 3242512 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000039"; gene_name "Xkr4"; oId "CUFF.41.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS42"; -chr1 Cufflinks exon 3242480 3242512 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000039"; exon_number "1"; +chr1 Cufflinks transcript 3213119 3213242 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000037"; gene_name "Xkr4"; oId "CUFF.37.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS40"; +chr1 Cufflinks exon 3213119 3213242 . . . transcript_id "TCONS_00000069"; gene_id "XLOC_000037"; exon_number "1"; +chr1 Cufflinks transcript 3240607 3240633 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000038"; gene_name "Xkr4"; oId "CUFF.39.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS41"; +chr1 Cufflinks exon 3240607 3240633 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000038"; exon_number "1"; +chr1 Cufflinks transcript 3242480 3242512 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000039"; gene_name "Xkr4"; oId "CUFF.41.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS42"; +chr1 Cufflinks exon 3242480 3242512 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000039"; exon_number "1"; chr1 Cufflinks transcript 3242634 3242923 . . . transcript_id "TCONS_00000027"; gene_id "XLOC_000040"; gene_name "Xkr4"; oId "CUFF.25.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS43"; chr1 Cufflinks exon 3242634 3242923 . . . transcript_id "TCONS_00000027"; gene_id "XLOC_000040"; exon_number "1"; -chr1 Cufflinks transcript 3242925 3243005 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000041"; gene_name "Xkr4"; oId "CUFF.43.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS44"; -chr1 Cufflinks exon 3242925 3243005 . . . transcript_id "TCONS_00000070"; gene_id "XLOC_000041"; exon_number "1"; +chr1 Cufflinks transcript 3242925 3243005 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000041"; gene_name "Xkr4"; oId "CUFF.43.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS44"; +chr1 Cufflinks exon 3242925 3243005 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000041"; exon_number "1"; chr1 Cufflinks transcript 3243019 3243079 . . . transcript_id "TCONS_00000028"; gene_id "XLOC_000042"; gene_name "Xkr4"; oId "CUFF.21.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS45"; chr1 Cufflinks exon 3243019 3243079 . . . transcript_id "TCONS_00000028"; gene_id "XLOC_000042"; exon_number "1"; -chr1 Cufflinks transcript 3243109 3243154 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000043"; gene_name "Xkr4"; oId "CUFF.45.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS46"; -chr1 Cufflinks exon 3243109 3243154 . . . transcript_id "TCONS_00000071"; gene_id "XLOC_000043"; exon_number "1"; +chr1 Cufflinks transcript 3243109 3243154 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000043"; gene_name "Xkr4"; oId "CUFF.45.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS46"; +chr1 Cufflinks exon 3243109 3243154 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000043"; exon_number "1"; chr1 Cufflinks transcript 3243348 3243401 . . . transcript_id "TCONS_00000029"; gene_id "XLOC_000044"; gene_name "Xkr4"; oId "CUFF.23.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS47"; chr1 Cufflinks exon 3243348 3243401 . . . transcript_id "TCONS_00000029"; gene_id "XLOC_000044"; exon_number "1"; -chr1 Cufflinks transcript 3254080 3254106 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000045"; gene_name "Xkr4"; oId "CUFF.47.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS48"; -chr1 Cufflinks exon 3254080 3254106 . . . transcript_id "TCONS_00000072"; gene_id "XLOC_000045"; exon_number "1"; +chr1 Cufflinks transcript 3254080 3254106 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000045"; gene_name "Xkr4"; oId "CUFF.47.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS48"; +chr1 Cufflinks exon 3254080 3254106 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000045"; exon_number "1"; chr1 Cufflinks transcript 3256975 3257011 . . . transcript_id "TCONS_00000030"; gene_id "XLOC_000046"; gene_name "Xkr4"; oId "CUFF.27.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS49"; chr1 Cufflinks exon 3256975 3257011 . . . transcript_id "TCONS_00000030"; gene_id "XLOC_000046"; exon_number "1"; -chr1 Cufflinks transcript 3277156 3277182 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000047"; gene_name "Xkr4"; oId "CUFF.49.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS50"; -chr1 Cufflinks exon 3277156 3277182 . . . transcript_id "TCONS_00000073"; gene_id "XLOC_000047"; exon_number "1"; +chr1 Cufflinks transcript 3277156 3277182 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000047"; gene_name "Xkr4"; oId "CUFF.49.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS50"; +chr1 Cufflinks exon 3277156 3277182 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000047"; exon_number "1"; chr1 Cufflinks transcript 3277191 3277218 . . . transcript_id "TCONS_00000031"; gene_id "XLOC_000048"; gene_name "Xkr4"; oId "CUFF.61.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS51"; chr1 Cufflinks exon 3277191 3277218 . . . transcript_id "TCONS_00000031"; gene_id "XLOC_000048"; exon_number "1"; -chr1 Cufflinks transcript 3277914 3278390 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.51.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS52"; -chr1 Cufflinks exon 3277914 3278390 . . . transcript_id "TCONS_00000074"; gene_id "XLOC_000049"; exon_number "1"; -chr1 Cufflinks transcript 3278237 3278263 . . . transcript_id "TCONS_00000032"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.63.1"; contained_in "TCONS_00000074"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS53"; +chr1 Cufflinks transcript 3277914 3278390 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.51.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS52"; +chr1 Cufflinks exon 3277914 3278390 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000049"; exon_number "1"; +chr1 Cufflinks transcript 3278237 3278263 . . . transcript_id "TCONS_00000032"; gene_id "XLOC_000049"; gene_name "Xkr4"; oId "CUFF.63.1"; contained_in "TCONS_00000076"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS53"; chr1 Cufflinks exon 3278237 3278263 . . . transcript_id "TCONS_00000032"; gene_id "XLOC_000049"; exon_number "1"; -chr1 Cufflinks transcript 3280118 3280144 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000050"; gene_name "Xkr4"; oId "CUFF.53.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS54"; -chr1 Cufflinks exon 3280118 3280144 . . . transcript_id "TCONS_00000075"; gene_id "XLOC_000050"; exon_number "1"; -chr1 Cufflinks transcript 3280499 3280525 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000051"; gene_name "Xkr4"; oId "CUFF.55.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS55"; -chr1 Cufflinks exon 3280499 3280525 . . . transcript_id "TCONS_00000076"; gene_id "XLOC_000051"; exon_number "1"; +chr1 Cufflinks transcript 3280118 3280144 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000050"; gene_name "Xkr4"; oId "CUFF.53.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS54"; +chr1 Cufflinks exon 3280118 3280144 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000050"; exon_number "1"; +chr1 Cufflinks transcript 3280499 3280525 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000051"; gene_name "Xkr4"; oId "CUFF.55.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS55"; +chr1 Cufflinks exon 3280499 3280525 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000051"; exon_number "1"; chr1 Cufflinks transcript 3280687 3280741 . . . transcript_id "TCONS_00000033"; gene_id "XLOC_000052"; gene_name "Xkr4"; oId "CUFF.65.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS56"; chr1 Cufflinks exon 3280687 3280741 . . . transcript_id "TCONS_00000033"; gene_id "XLOC_000052"; exon_number "1"; -chr1 Cufflinks transcript 3282505 3282531 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000053"; gene_name "Xkr4"; oId "CUFF.57.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS57"; -chr1 Cufflinks exon 3282505 3282531 . . . transcript_id "TCONS_00000077"; gene_id "XLOC_000053"; exon_number "1"; -chr1 Cufflinks transcript 3282651 3282677 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000054"; gene_name "Xkr4"; oId "CUFF.59.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS58"; -chr1 Cufflinks exon 3282651 3282677 . . . transcript_id "TCONS_00000078"; gene_id "XLOC_000054"; exon_number "1"; -chr1 Cufflinks transcript 3282761 3282832 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000055"; gene_name "Xkr4"; oId "CUFF.61.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS59"; -chr1 Cufflinks exon 3282761 3282832 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000055"; exon_number "1"; -chr1 Cufflinks transcript 3284967 3284993 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000056"; gene_name "Xkr4"; oId "CUFF.63.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS60"; -chr1 Cufflinks exon 3284967 3284993 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000056"; exon_number "1"; +chr1 Cufflinks transcript 3282505 3282531 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000053"; gene_name "Xkr4"; oId "CUFF.57.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS57"; +chr1 Cufflinks exon 3282505 3282531 . . . transcript_id "TCONS_00000079"; gene_id "XLOC_000053"; exon_number "1"; +chr1 Cufflinks transcript 3282651 3282677 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000054"; gene_name "Xkr4"; oId "CUFF.59.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS58"; +chr1 Cufflinks exon 3282651 3282677 . . . transcript_id "TCONS_00000080"; gene_id "XLOC_000054"; exon_number "1"; +chr1 Cufflinks transcript 3282761 3282832 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000055"; gene_name "Xkr4"; oId "CUFF.61.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS59"; +chr1 Cufflinks exon 3282761 3282832 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000055"; exon_number "1"; +chr1 Cufflinks transcript 3284967 3284993 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000056"; gene_name "Xkr4"; oId "CUFF.63.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS60"; +chr1 Cufflinks exon 3284967 3284993 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000056"; exon_number "1"; chr1 Cufflinks transcript 3290489 3290553 . . . transcript_id "TCONS_00000034"; gene_id "XLOC_000057"; gene_name "Xkr4"; oId "CUFF.67.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS61"; chr1 Cufflinks exon 3290489 3290553 . . . transcript_id "TCONS_00000034"; gene_id "XLOC_000057"; exon_number "1"; -chr1 Cufflinks transcript 3290799 3290859 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000058"; gene_name "Xkr4"; oId "CUFF.65.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS62"; -chr1 Cufflinks exon 3290799 3290859 . . . transcript_id "TCONS_00000081"; gene_id "XLOC_000058"; exon_number "1"; -chr1 Cufflinks transcript 3290920 3291273 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; -chr1 Cufflinks exon 3290920 3291273 . . . transcript_id "TCONS_00000082"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3290940 3291023 . . . transcript_id "TCONS_00000035"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; contained_in "TCONS_00000082"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; +chr1 Cufflinks transcript 3290799 3290859 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000058"; gene_name "Xkr4"; oId "CUFF.65.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS62"; +chr1 Cufflinks exon 3290799 3290859 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000058"; exon_number "1"; +chr1 Cufflinks transcript 3290920 3291273 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; +chr1 Cufflinks exon 3290920 3291273 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000059"; exon_number "1"; +chr1 Cufflinks transcript 3290940 3291023 . . . transcript_id "TCONS_00000035"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.69.1"; contained_in "TCONS_00000084"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS63"; chr1 Cufflinks exon 3290940 3291023 . . . transcript_id "TCONS_00000035"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3291089 3291186 . . . transcript_id "TCONS_00000036"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.71.1"; contained_in "TCONS_00000082"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS64"; +chr1 Cufflinks transcript 3291089 3291186 . . . transcript_id "TCONS_00000036"; gene_id "XLOC_000059"; gene_name "Xkr4"; oId "CUFF.71.1"; contained_in "TCONS_00000084"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS64"; chr1 Cufflinks exon 3291089 3291186 . . . transcript_id "TCONS_00000036"; gene_id "XLOC_000059"; exon_number "1"; -chr1 Cufflinks transcript 3299444 3299640 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000060"; gene_name "Xkr4"; oId "CUFF.67.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS65"; -chr1 Cufflinks exon 3299444 3299640 . . . transcript_id "TCONS_00000083"; gene_id "XLOC_000060"; exon_number "1"; +chr1 Cufflinks transcript 3299444 3299640 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000060"; gene_name "Xkr4"; oId "CUFF.67.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS65"; +chr1 Cufflinks exon 3299444 3299640 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000060"; exon_number "1"; chr1 Cufflinks transcript 3299610 3299664 . . . transcript_id "TCONS_00000037"; gene_id "XLOC_000060"; gene_name "Xkr4"; oId "CUFF.73.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS66"; chr1 Cufflinks exon 3299610 3299664 . . . transcript_id "TCONS_00000037"; gene_id "XLOC_000060"; exon_number "1"; -chr1 Cufflinks transcript 3299692 3299733 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000061"; gene_name "Xkr4"; oId "CUFF.71.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS67"; -chr1 Cufflinks exon 3299692 3299733 . . . transcript_id "TCONS_00000084"; gene_id "XLOC_000061"; exon_number "1"; +chr1 Cufflinks transcript 3299692 3299733 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000061"; gene_name "Xkr4"; oId "CUFF.71.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS67"; +chr1 Cufflinks exon 3299692 3299733 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000061"; exon_number "1"; chr1 Cufflinks transcript 3300052 3300078 . . . transcript_id "TCONS_00000038"; gene_id "XLOC_000062"; gene_name "Xkr4"; oId "CUFF.75.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS68"; chr1 Cufflinks exon 3300052 3300078 . . . transcript_id "TCONS_00000038"; gene_id "XLOC_000062"; exon_number "1"; -chr1 Cufflinks transcript 3307749 3307775 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000063"; gene_name "Xkr4"; oId "CUFF.73.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS69"; -chr1 Cufflinks exon 3307749 3307775 . . . transcript_id "TCONS_00000085"; gene_id "XLOC_000063"; exon_number "1"; -chr1 Cufflinks transcript 3318621 3318647 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000064"; gene_name "Xkr4"; oId "CUFF.75.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS70"; -chr1 Cufflinks exon 3318621 3318647 . . . transcript_id "TCONS_00000086"; gene_id "XLOC_000064"; exon_number "1"; +chr1 Cufflinks transcript 3307749 3307775 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000063"; gene_name "Xkr4"; oId "CUFF.73.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS69"; +chr1 Cufflinks exon 3307749 3307775 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000063"; exon_number "1"; +chr1 Cufflinks transcript 3318621 3318647 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000064"; gene_name "Xkr4"; oId "CUFF.75.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS70"; +chr1 Cufflinks exon 3318621 3318647 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000064"; exon_number "1"; chr1 Cufflinks transcript 3319000 3319051 . . . transcript_id "TCONS_00000039"; gene_id "XLOC_000065"; gene_name "Xkr4"; oId "CUFF.77.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS71"; chr1 Cufflinks exon 3319000 3319051 . . . transcript_id "TCONS_00000039"; gene_id "XLOC_000065"; exon_number "1"; -chr1 Cufflinks transcript 3330528 3330554 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000066"; gene_name "Xkr4"; oId "CUFF.77.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS72"; -chr1 Cufflinks exon 3330528 3330554 . . . transcript_id "TCONS_00000087"; gene_id "XLOC_000066"; exon_number "1"; -chr1 Cufflinks transcript 3351241 3351311 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000067"; gene_name "Xkr4"; oId "CUFF.79.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS73"; -chr1 Cufflinks exon 3351241 3351311 . . . transcript_id "TCONS_00000088"; gene_id "XLOC_000067"; exon_number "1"; +chr1 Cufflinks transcript 3330528 3330554 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000066"; gene_name "Xkr4"; oId "CUFF.77.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS72"; +chr1 Cufflinks exon 3330528 3330554 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000066"; exon_number "1"; +chr1 Cufflinks transcript 3351241 3351311 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000067"; gene_name "Xkr4"; oId "CUFF.79.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS73"; +chr1 Cufflinks exon 3351241 3351311 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000067"; exon_number "1"; chr1 Cufflinks transcript 3355888 3355914 . . . transcript_id "TCONS_00000040"; gene_id "XLOC_000068"; gene_name "Xkr4"; oId "CUFF.79.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS74"; chr1 Cufflinks exon 3355888 3355914 . . . transcript_id "TCONS_00000040"; gene_id "XLOC_000068"; exon_number "1"; -chr1 Cufflinks transcript 3355908 3356119 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000068"; gene_name "Xkr4"; oId "CUFF.81.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS74"; -chr1 Cufflinks exon 3355908 3356119 . . . transcript_id "TCONS_00000089"; gene_id "XLOC_000068"; exon_number "1"; -chr1 Cufflinks transcript 3356181 3356225 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000069"; gene_name "Xkr4"; oId "CUFF.83.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS75"; -chr1 Cufflinks exon 3356181 3356225 . . . transcript_id "TCONS_00000090"; gene_id "XLOC_000069"; exon_number "1"; -chr1 Cufflinks transcript 3363077 3363176 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000070"; gene_name "Xkr4"; oId "CUFF.85.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS76"; -chr1 Cufflinks exon 3363077 3363176 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000070"; exon_number "1"; +chr1 Cufflinks transcript 3355908 3356119 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000068"; gene_name "Xkr4"; oId "CUFF.81.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS74"; +chr1 Cufflinks exon 3355908 3356119 . . . transcript_id "TCONS_00000091"; gene_id "XLOC_000068"; exon_number "1"; +chr1 Cufflinks transcript 3356181 3356225 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000069"; gene_name "Xkr4"; oId "CUFF.83.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS75"; +chr1 Cufflinks exon 3356181 3356225 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000069"; exon_number "1"; +chr1 Cufflinks transcript 3363077 3363176 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000070"; gene_name "Xkr4"; oId "CUFF.85.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS76"; +chr1 Cufflinks exon 3363077 3363176 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000070"; exon_number "1"; chr1 Cufflinks transcript 3363215 3363278 . . . transcript_id "TCONS_00000041"; gene_id "XLOC_000071"; gene_name "Xkr4"; oId "CUFF.81.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS77"; chr1 Cufflinks exon 3363215 3363278 . . . transcript_id "TCONS_00000041"; gene_id "XLOC_000071"; exon_number "1"; -chr1 Cufflinks transcript 3363388 3363446 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000072"; gene_name "Xkr4"; oId "CUFF.87.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS78"; -chr1 Cufflinks exon 3363388 3363446 . . . transcript_id "TCONS_00000092"; gene_id "XLOC_000072"; exon_number "1"; +chr1 Cufflinks transcript 3363388 3363446 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000072"; gene_name "Xkr4"; oId "CUFF.87.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS78"; +chr1 Cufflinks exon 3363388 3363446 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000072"; exon_number "1"; chr1 Cufflinks transcript 3363754 3363849 . . . transcript_id "TCONS_00000042"; gene_id "XLOC_000073"; gene_name "Xkr4"; oId "CUFF.83.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS79"; chr1 Cufflinks exon 3363754 3363849 . . . transcript_id "TCONS_00000042"; gene_id "XLOC_000073"; exon_number "1"; -chr1 Cufflinks transcript 3364872 3364919 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000074"; gene_name "Xkr4"; oId "CUFF.89.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS80"; -chr1 Cufflinks exon 3364872 3364919 . . . transcript_id "TCONS_00000093"; gene_id "XLOC_000074"; exon_number "1"; +chr1 Cufflinks transcript 3364872 3364919 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000074"; gene_name "Xkr4"; oId "CUFF.89.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS80"; +chr1 Cufflinks exon 3364872 3364919 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000074"; exon_number "1"; chr1 Cufflinks transcript 3367136 3367162 . . . transcript_id "TCONS_00000043"; gene_id "XLOC_000075"; gene_name "Xkr4"; oId "CUFF.85.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS81"; chr1 Cufflinks exon 3367136 3367162 . . . transcript_id "TCONS_00000043"; gene_id "XLOC_000075"; exon_number "1"; -chr1 Cufflinks transcript 3367211 3367237 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000076"; gene_name "Xkr4"; oId "CUFF.91.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS82"; -chr1 Cufflinks exon 3367211 3367237 . . . transcript_id "TCONS_00000094"; gene_id "XLOC_000076"; exon_number "1"; +chr1 Cufflinks transcript 3367211 3367237 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000076"; gene_name "Xkr4"; oId "CUFF.91.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS82"; +chr1 Cufflinks exon 3367211 3367237 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000076"; exon_number "1"; chr1 Cufflinks transcript 3367334 3367382 . . . transcript_id "TCONS_00000044"; gene_id "XLOC_000077"; gene_name "Xkr4"; oId "CUFF.87.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS83"; chr1 Cufflinks exon 3367334 3367382 . . . transcript_id "TCONS_00000044"; gene_id "XLOC_000077"; exon_number "1"; -chr1 Cufflinks transcript 3369581 3369607 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000078"; gene_name "Xkr4"; oId "CUFF.93.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS84"; -chr1 Cufflinks exon 3369581 3369607 . . . transcript_id "TCONS_00000095"; gene_id "XLOC_000078"; exon_number "1"; -chr1 Cufflinks transcript 3375002 3375028 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000079"; gene_name "Xkr4"; oId "CUFF.95.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS85"; -chr1 Cufflinks exon 3375002 3375028 . . . transcript_id "TCONS_00000096"; gene_id "XLOC_000079"; exon_number "1"; +chr1 Cufflinks transcript 3369581 3369607 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000078"; gene_name "Xkr4"; oId "CUFF.93.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS84"; +chr1 Cufflinks exon 3369581 3369607 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000078"; exon_number "1"; +chr1 Cufflinks transcript 3375002 3375028 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000079"; gene_name "Xkr4"; oId "CUFF.95.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS85"; +chr1 Cufflinks exon 3375002 3375028 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000079"; exon_number "1"; chr1 Cufflinks transcript 3377212 3377262 . . . transcript_id "TCONS_00000045"; gene_id "XLOC_000080"; gene_name "Xkr4"; oId "CUFF.89.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS86"; chr1 Cufflinks exon 3377212 3377262 . . . transcript_id "TCONS_00000045"; gene_id "XLOC_000080"; exon_number "1"; -chr1 Cufflinks transcript 3379889 3379915 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000081"; gene_name "Xkr4"; oId "CUFF.97.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS87"; -chr1 Cufflinks exon 3379889 3379915 . . . transcript_id "TCONS_00000097"; gene_id "XLOC_000081"; exon_number "1"; -chr1 Cufflinks transcript 3386740 3386836 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000082"; gene_name "Xkr4"; oId "CUFF.99.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS88"; -chr1 Cufflinks exon 3386740 3386836 . . . transcript_id "TCONS_00000098"; gene_id "XLOC_000082"; exon_number "1"; +chr1 Cufflinks transcript 3379889 3379915 . . . transcript_id "TCONS_00000099"; gene_id "XLOC_000081"; gene_name "Xkr4"; oId "CUFF.97.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS87"; +chr1 Cufflinks exon 3379889 3379915 . . . transcript_id "TCONS_00000099"; gene_id "XLOC_000081"; exon_number "1"; +chr1 Cufflinks transcript 3386740 3386836 . . . transcript_id "TCONS_00000100"; gene_id "XLOC_000082"; gene_name "Xkr4"; oId "CUFF.99.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS88"; +chr1 Cufflinks exon 3386740 3386836 . . . transcript_id "TCONS_00000100"; gene_id "XLOC_000082"; exon_number "1"; chr1 Cufflinks transcript 3391326 3391352 . . . transcript_id "TCONS_00000046"; gene_id "XLOC_000083"; gene_name "Xkr4"; oId "CUFF.91.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS89"; chr1 Cufflinks exon 3391326 3391352 . . . transcript_id "TCONS_00000046"; gene_id "XLOC_000083"; exon_number "1"; chr1 Cufflinks transcript 3435842 3435880 . . . transcript_id "TCONS_00000047"; gene_id "XLOC_000084"; gene_name "Xkr4"; oId "CUFF.93.1"; cmp_ref "Xkr4"; class_code "i"; tss_id "TSS90";