Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out2.stats @ 5:f99dd58de04f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8028c2640d2d213da5097df2341a8281fe0b7c8
| author | iuc |
|---|---|
| date | Fri, 03 Feb 2023 10:57:30 +0000 |
| parents | 2bb86e2c417f |
| children |
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--- a/test-data/gffcompare_out2.stats Thu Oct 17 03:01:26 2019 -0400 +++ b/test-data/gffcompare_out2.stats Fri Feb 03 10:57:30 2023 +0000 @@ -1,47 +1,47 @@ -# gffcompare v0.11.2 | Command line was: -#gffcompare -r ref_annotation -e 100 -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf +# gffcompare v0.12.6 | Command line was: +#gffcompare -V -r reference_annotation -T -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf # #= Summary for dataset: gffcompare_in1_gtf # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) -# Reference mRNAs : 1 in 1 loci (0 multi-exon) -# Super-loci w/ reference transcripts: 1 +# Reference mRNAs : 4 in 4 loci (0 multi-exon) +# Super-loci w/ reference transcripts: 2 #-----------------| Sensitivity | Precision | - Base level: 94.7 | 42.9 | - Exon level: 100.0 | 40.0 | - Transcript level: 0.0 | 0.0 | - Locus level: 0.0 | 0.0 | + Base level: 45.5 | 35.7 | + Exon level: 50.0 | 40.0 | + Transcript level: 25.0 | 20.0 | + Locus level: 25.0 | 20.0 | Matching intron chains: 0 - Matching transcripts: 0 - Matching loci: 0 + Matching transcripts: 1 + Matching loci: 1 - Missed exons: 0/1 ( 0.0%) + Missed exons: 2/4 ( 50.0%) Novel exons: 3/5 ( 60.0%) - Missed loci: 0/1 ( 0.0%) + Missed loci: 2/4 ( 50.0%) Novel loci: 3/5 ( 60.0%) #= Summary for dataset: gffcompare_in2_gtf # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) -# Reference mRNAs : 1 in 1 loci (0 multi-exon) -# Super-loci w/ reference transcripts: 1 +# Reference mRNAs : 4 in 4 loci (0 multi-exon) +# Super-loci w/ reference transcripts: 4 #-----------------| Sensitivity | Precision | - Base level: 31.6 | 18.2 | - Exon level: 100.0 | 25.0 | - Transcript level: 0.0 | 0.0 | - Locus level: 0.0 | 0.0 | + Base level: 100.0 | 100.0 | + Exon level: 100.0 | 100.0 | + Transcript level: 100.0 | 100.0 | + Locus level: 100.0 | 100.0 | Matching intron chains: 0 - Matching transcripts: 0 - Matching loci: 0 + Matching transcripts: 4 + Matching loci: 4 - Missed exons: 0/1 ( 0.0%) - Novel exons: 3/4 ( 75.0%) - Missed loci: 0/1 ( 0.0%) - Novel loci: 3/4 ( 75.0%) + Missed exons: 0/4 ( 0.0%) + Novel exons: 0/4 ( 0.0%) + Missed loci: 0/4 ( 0.0%) + Novel loci: 0/4 ( 0.0%) - Total union super-loci across all input datasets: 6 - (0 multi-transcript, ~1.3 transcripts per locus) + Total union super-loci across all input datasets: 7 + (0 multi-transcript, ~1.1 transcripts per locus) 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)