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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 8e8c67f4aa5ab37fc28c512b4e9e7f26a2d1e604
| author | iuc |
|---|---|
| date | Fri, 04 Oct 2024 08:47:42 +0000 |
| parents | f99dd58de04f |
| children |
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# gffcompare v0.12.6 | Command line was: #gffcompare -V -r reference_annotation -T -d 100 -p TCONS gffcompare_in1_gtf gffcompare_in2_gtf # #= Summary for dataset: gffcompare_in1_gtf # Query mRNAs : 5 in 5 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 4 in 4 loci (0 multi-exon) # Super-loci w/ reference transcripts: 2 #-----------------| Sensitivity | Precision | Base level: 45.5 | 35.7 | Exon level: 50.0 | 40.0 | Transcript level: 25.0 | 20.0 | Locus level: 25.0 | 20.0 | Matching intron chains: 0 Matching transcripts: 1 Matching loci: 1 Missed exons: 2/4 ( 50.0%) Novel exons: 3/5 ( 60.0%) Missed loci: 2/4 ( 50.0%) Novel loci: 3/5 ( 60.0%) #= Summary for dataset: gffcompare_in2_gtf # Query mRNAs : 4 in 4 loci (0 multi-exon transcripts) # (0 multi-transcript loci, ~1.0 transcripts per locus) # Reference mRNAs : 4 in 4 loci (0 multi-exon) # Super-loci w/ reference transcripts: 4 #-----------------| Sensitivity | Precision | Base level: 100.0 | 100.0 | Exon level: 100.0 | 100.0 | Transcript level: 100.0 | 100.0 | Locus level: 100.0 | 100.0 | Matching intron chains: 0 Matching transcripts: 4 Matching loci: 4 Missed exons: 0/4 ( 0.0%) Novel exons: 0/4 ( 0.0%) Missed loci: 0/4 ( 0.0%) Novel loci: 0/4 ( 0.0%) Total union super-loci across all input datasets: 7 (0 multi-transcript, ~1.1 transcripts per locus) 8 out of 8 consensus transcripts written in gffcmp.combined.gtf (0 discarded as redundant)