Mercurial > repos > iuc > ggplot2_heatmap

changeset 9:1a72f938213e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ggplot2 commit 6737c924917eea8c009c30d7f9917d5a341b9948
author iuc
date Mon, 30 Sep 2024 15:40:17 +0000
parents 10515715c940
children
files ggplot2_heatmap.xml macros.xml
diffstat 2 files changed, 5 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/ggplot2_heatmap.xml	Fri Dec 09 22:40:27 2022 +0000
+++ b/ggplot2_heatmap.xml	Mon Sep 30 15:40:17 2024 +0000
@@ -1,8 +1,8 @@
 <tool id="ggplot2_heatmap" name="Heatmap w ggplot" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <requirements>
         <requirement type="package" version="1.1.1">r-cowplot</requirement>
         <requirement type="package" version="0.4.5">r-egg</requirement>
@@ -158,7 +158,7 @@
          <expand macro="additional_output" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="input1" value="mtcars.txt" ftype="tabular"/>
             <conditional name="inputdata">
                 <param name="input_type" value="with_header_rownames"/>
@@ -170,7 +170,7 @@
             <param name="cluster" value="true"/>
             <param name="colorscheme" value="blwhre"/>
             <param name="additional_output_format" value="pdf"/>
-            <output name="output2" file="ggplot_heatmap_result1.pdf" compare="sim_size"/>
+            <output name="output2" file="ggplot_heatmap_result1.pdf" ftype="pdf" compare="sim_size"/>
         </test>
     </tests>
     <help><![CDATA[
@@ -178,6 +178,5 @@
 
 Input data should have row labels in the first column and column labels. For example, the row labels (the first column) should represent gene IDs and the column labels should represent sample IDs.
     ]]></help>
-    <citations>
-    </citations>
+    <expand macro="citations"/>
 </tool>
--- a/macros.xml	Fri Dec 09 22:40:27 2022 +0000
+++ b/macros.xml	Mon Sep 30 15:40:17 2024 +0000
@@ -13,7 +13,7 @@
         </xrefs>
     </xml>
     <token name="@TOOL_VERSION@">3.4.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
 
     <token name="@R_INIT@"><![CDATA[
         ## Setup R error handling to go to stderr