comparison heatmap2.xml @ 8:374e9062d874 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/heatmap2 commit 5b6fb9641a1320e13aba367c4e7bc52ae064acc6

7:53460afd5115

<tool id="ggplot2_heatmap2" name="heatmap2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01">
    <macros>
        <token name="@TOOL_VERSION@">3.1.3</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">r-gplots</requirement>
        <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement>

        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="no"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result2.png" compare="sim_size"/>
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="zscore" value="cols"/>
            <param name="cluster" value="yes"/>

        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="zscore" value="rows"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result4.png" compare="sim_size"/>
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="yes"/>
            <param name="distance" value="pearson_correlation"/>
            <param name="scale" value="row"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result5.png" compare="sim_size"/>
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="yes"/>
            <param name="distance" value="spearmann_correlation"/>
            <param name="scale" value="column"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result6.png" compare="sim_size"/>
        </test>
    </tests>
    <help><![CDATA[
This tool employs the heatmap.2 function from the R gplots package and will generate a heatmap of your data. If clustering is enabled, the heatmap uses the Euclidean distance method and the Complete hierarchical clustering method by default.

8:374e9062d874

<tool id="ggplot2_heatmap2" name="heatmap2" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.01">
    <macros>
        <token name="@TOOL_VERSION@">3.1.3.1</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">r-gplots</requirement>
        <requirement type="package" version="1.1_3">r-rcolorbrewer</requirement>

        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="no"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result2.png" compare="sim_size" delta="12000" />
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="zscore" value="cols"/>
            <param name="cluster" value="yes"/>

        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="zscore" value="rows"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result4.png" compare="sim_size" delta="12000" />
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="yes"/>
            <param name="distance" value="pearson_correlation"/>
            <param name="scale" value="row"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result5.png" compare="sim_size" delta="12000" />
        </test>
        <test>
            <param name="input1" value="mtcars.txt"/>
            <param name="cluster" value="yes"/>
            <param name="distance" value="spearmann_correlation"/>
            <param name="scale" value="column"/>
            <param name="type" value="three"/>
            <param name="image_file_format" value="png"/>
            <output name="output1" file="result6.png" compare="sim_size" delta="12000" />
        </test>
    </tests>
    <help><![CDATA[
This tool employs the heatmap.2 function from the R gplots package and will generate a heatmap of your data. If clustering is enabled, the heatmap uses the Euclidean distance method and the Complete hierarchical clustering method by default.